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Strain Registration

Strain: DA.F344-Aia1/4

Symbol: DA.F344-Aia1/4
Strain: DA, F344
RGD ID: 629494
Citation ID: RRID:RGD_629494
Ontology ID: RS:0000223
Type: congenic
Available Source: Not Available
Origination: National Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland
Description: genomic segments with region of interest from chr 10 were inserted to DA strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81023,948,641 - 23,948,818RGD_MAPPER_PIPELINE
mRatBN7.21023,444,813 - 104,060,283RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01024,483,076 - 107,857,673RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01024,340,447 - 107,484,761RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41024,006,429 - 24,006,612RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
joint swelling  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. Evaluation of quantitative trait loci regulating severity of mycobacterial adjuvant-induced arthritis in monocongenic and polycongenic rats: identification of a new regulatory locus on rat chromosome 10 and evidence of overlap with rheumatoid arthritis susceptibility loci. Joe B, etal., Arthritis Rheum 2002 Apr;46(4):1075-85.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Arb20)
Rat AssemblyChrPosition (strand)Source
GRCr81023,948,641 - 23,948,818 (+)Marker Load Pipeline
mRatBN7.21023,444,813 - 23,444,992 (+)MAPPER
Rnor_6.01024,483,076 - 24,483,258NCBI
Rnor_5.01024,340,447 - 24,340,629UniSTS
RGSC_v3.41024,006,429 - 24,006,612RGD
RGSC_v3.41024,006,430 - 24,006,612UniSTS
RGSC_v3.11024,007,478 - 24,007,661RGD
Celera1023,044,707 - 23,044,873UniSTS
Cytogenetic Map10 RGD

Flank 2 / 1 (D10Arb22)
Rat AssemblyChrPosition (strand)Source
mRatBN7.210104,060,133 - 104,060,283 (+)MAPPER
Rnor_6.010107,857,524 - 107,857,673NCBI
Rnor_5.010107,484,612 - 107,484,761UniSTS
Celera10102,615,292 - 102,615,441UniSTS
Cytogenetic Map10q32.3UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics In this congenic strain the score of arthritis is 75% higher 625379