Strain Report - Rat Genome Database

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Strain: ACI.COP-(D5Rat12-D5Rat205)/Shul

Symbol: ACI.COP-(D5Rat12-D5Rat205)/Shul
Strain: ACI.COP-(D5Rat12-D5Rat205)
Substrain: Shul
RGD ID: 5688405
Citation ID: RRID:RGD_5688405
Ontology ID: RS:0003192
Previously known as: ACI.COP-(D5Rat12-D5Rat205)/Shul
Type: congenic
Source: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Origin: This congenic strain contains a region of COP/CrCrl chromosome 5 transferred to the ACI/SegHsd strain background.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2567,856,776 - 67,856,928RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0570,038,765 - 70,038,916RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0574,199,071 - 74,199,222RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4570,669,803 - 70,670,361RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Rat12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2567,856,776 - 67,856,928 (+)MAPPER
Rnor_6.0570,038,765 - 70,038,916NCBI
Rnor_5.0574,199,071 - 74,199,222UniSTS
RGSC_v3.4570,669,803 - 70,670,361RGD
RGSC_v3.4570,669,835 - 70,669,986UniSTS
RGSC_v3.1570,674,948 - 70,675,099RGD
Celera566,751,510 - 66,751,661UniSTS
RH 3.4 Map5467.2UniSTS
RH 3.4 Map5467.2RGD
RH 2.0 Map5380.8RGD
SHRSP x BN Map539.5399RGD
FHH x ACI Map533.61RGD

Flank 2 / 1 (D5Rat205)
Rat AssemblyChrPosition (strand)Source
SHRSP x BN Map594.3799UniSTS
SHRSP x BN Map594.3799RGD

Additional Information