Strain Report - Rat Genome Database

Name: ACI.COP-( D5Rat12-D5Rat205 )/Shul
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: ACI.COP-(D5Rat12-D5Rat205)/Shul

Symbol:

ACI.COP-(D5Rat12-D5Rat205)/Shul

Strain:

ACI.COP-(D5Rat12-D5Rat205)

Substrain:

Shul

RGD ID:

5688405

Citation ID:

RRID:RGD_5688405

Ontology ID:

RS:0003192

Previously known as:

ACI.COP-(D5Rat12-D5Rat205)/Shul

Type:

congenic

Source:

Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison

Origin:

This congenic strain contains a region of COP/CrCrl chromosome 5 transferred to the ACI/SegHsd strain background.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	67,856,776 - 67,856,928	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	5	70,038,765 - 70,038,916	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	5	74,199,071 - 74,199,222	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	5	70,669,803 - 70,670,361	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Data registered by Dr. James D. Shull's group	Personal communication between Dr. James D. Shull's group and the RGD curators
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Rat12)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	67,856,776 - 67,856,928 (+)	MAPPER
Rnor_6.0	5	70,038,765 - 70,038,916	NCBI
Rnor_5.0	5	74,199,071 - 74,199,222	UniSTS
RGSC_v3.4	5	70,669,803 - 70,670,361	RGD
RGSC_v3.4	5	70,669,835 - 70,669,986	UniSTS
RGSC_v3.1	5	70,674,948 - 70,675,099	RGD
Celera	5	66,751,510 - 66,751,661	UniSTS
RH 3.4 Map	5	467.2	UniSTS
RH 3.4 Map	5	467.2	RGD
RH 2.0 Map	5	380.8	RGD
SHRSP x BN Map	5	39.5399	RGD
FHH x ACI Map	5	33.61	RGD

Flank 2 / 1 (D5Rat205)

Rat Assembly	Chr	Position (strand)	Source
SHRSP x BN Map	5	94.3799	UniSTS
SHRSP x BN Map	5	94.3799	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: ACI.COP-(D5Rat12-D5Rat205)/Shul