Strain Report - Rat Genome Database

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Strain: ACI.BN-(D3Rat80-D3Rat3)/Shul

Symbol: ACI.BN-(D3Rat80-D3Rat3)/Shul
Strain: ACI.BN-(D3Rat80-D3Rat3)
Substrain: Shul
RGD ID: 5688396
Citation ID: RRID:RGD_5688396
Ontology ID: RS:0003189
Also Known As: ACI.BN-(D3Rat80-D3Rat3)/Shul
Type: congenic
Available Source: Not Available
Origination: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Description: This congenic strain contains a region of BN/SsNHsd chromosome 3 transferred to the ACI/SegHsd strain background.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2335,528,428 - 160,482,157RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0336,599,933 - 169,714,239RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0341,713,824 - 175,796,738RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4332,056,563 - 162,589,029RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Rat80)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2335,528,428 - 35,528,639 (+)MAPPER
Rnor_6.0336,599,933 - 36,600,143NCBI
Rnor_5.0341,713,824 - 41,714,034UniSTS
RGSC_v3.4332,056,563 - 32,056,774RGD
RGSC_v3.4332,056,564 - 32,056,774UniSTS
RGSC_v3.1331,952,935 - 31,953,146RGD
Celera333,686,883 - 33,687,093UniSTS
RH 2.0 Map3188.3RGD
SHRSP x BN Map318.8999RGD
FHH x ACI Map327.9799RGD

Flank 2 / 1 (D3Rat3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23160,482,009 - 160,482,157 (+)MAPPER
Rnor_6.03169,714,094 - 169,714,239NCBI
Rnor_5.03175,796,593 - 175,796,738UniSTS
RGSC_v3.43162,588,884 - 162,589,029UniSTS
RGSC_v3.43162,588,883 - 162,589,029RGD
RGSC_v3.13162,494,919 - 162,495,065RGD
Celera3159,691,371 - 159,691,496UniSTS
RH 3.4 Map31488.7RGD
RH 3.4 Map31488.7UniSTS
SHRSP x BN Map384.5899UniSTS
SHRSP x BN Map384.5899RGD
FHH x ACI Map3102.69RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-03-01 ACI.BN-(D3Rat80-D3Rat3)/Shul    ACI.BN-(D3Rat80-D3Rat3)/Shul    Name updated 68913 APPROVED
2012-03-01 ACI.BN-(D3Rat80-D3Rat3)/Shul    ACI.BN-(D3Rat80-D3Rat3)/Shul    Name updated 68913 APPROVED