Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: ACI.BN-(D5Rat72-D5Rat36)/Shul

Symbol: ACI.BN-(D5Rat72-D5Rat36)/Shul
Strain: ACI.BN-(D5Rat72-D5Rat36)
Substrain: Shul
RGD ID: 5509086
Citation ID: RRID:RGD_5509086
Ontology ID: RS:0002944
Also Known As: ACI.BN-Emca8b3; Emca8b3; ACI.BN-(D5Rat72-D5Rat36)/Shul
Type: congenic
Available Source: Not Available
Origination: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Description: This congenic strain contains a region of BN/SsNHsd chromosome 5 transferred to the ACI/SegHsd strain background
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25114,973,303 - 138,113,774RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05119,124,918 - 143,846,372RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05123,027,973 - 147,610,238RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45120,983,238 - 145,187,034RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Mapping of three genetic determinants of susceptibility to estrogen-induced mammary cancer within the Emca8 locus on rat chromosome 5. Schaffer BS, etal., Cancer Prev Res (Phila). 2013 Jan;6(1):59-69. doi: 10.1158/1940-6207.CAPR-12-0346-T. Epub 2012 Nov 14.

Region

Position Markers

Flank 1 / 1 (D5Rat72)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25114,973,303 - 114,973,531 (+)MAPPER
Rnor_6.05119,124,918 - 119,125,145NCBI
Rnor_5.05123,027,973 - 123,028,200UniSTS
RGSC_v3.45120,983,238 - 120,983,466RGD
RGSC_v3.45120,983,239 - 120,983,466UniSTS
RGSC_v3.15120,988,464 - 120,988,692RGD
Celera5113,520,186 - 113,520,413UniSTS
SHRSP x BN Map563.7699RGD
SHRSP x BN Map563.7699UniSTS
Cytogenetic Map5q33UniSTS

Flank 2 / 1 (D5Rat36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25138,113,556 - 138,113,774 (+)MAPPER
Rnor_6.05143,846,157 - 143,846,372NCBI
Rnor_5.05147,610,023 - 147,610,238UniSTS
RGSC_v3.45145,186,818 - 145,187,033UniSTS
RGSC_v3.45145,186,817 - 145,187,034RGD
RGSC_v3.15145,196,810 - 145,197,027RGD
Celera5136,626,405 - 136,626,620UniSTS
RH 3.4 Map5909.5RGD
RH 3.4 Map5909.5UniSTS
RH 2.0 Map5884.1RGD
SHRSP x BN Map576.2899RGD

Additional Information