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Strain Registration

Strain: SS-Ncf2em4Mcwi

Symbol: SS-Ncf2em4Mcwi
Strain: SS-Ncf2em4
Substrain: Mcwi
RGD ID: 5508362
Citation ID: RRID:RGD_5508362
Ontology ID: RS:0002925
Alleles: Ncf2em4Mcwi
Previously known as: SS-Ncf2em4Mcwi
Type: mutant
Source: PhysGen Knockouts
Origin: This strain was produced by injecting ZFNs targeting the sequence CTCTACTACAGCATGgagaagTAAGTGGTGTCGGAGTGT into SS/JrHsdMcwi rat embryos. The resulting mutation is a net 139-bp deletion of part of intron 1 and exon 2.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21364,958,078 - 64,958,221RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01370,226,441 - 70,259,019RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01375,197,561 - 75,229,600RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41367,806,516 - 67,834,105RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Ncf2em4Mcwi-var1 chr13 64958078 64958221 TGCCAATGCTTACACTTCCTCTCTGCCTGGCTCTGTGGCCATGTAACCCTTCCCCCTGCAGGCCTTCACCAAAAGCATCAACAGAGACAAGCACTTGGCAGTGGCTTACTTCCAGCGAGGAATGCTCTACTACAGCATGGAGAA ATCTT delins mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Ncf2em4Mcwi    SS-Ncf2em4Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Ncf2em4Mcwi    SS-Ncf2em4Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Ncf2em4Mcwi    SS-Ncf2em4Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Ncf2em4Mcwi    SS-Ncf2em4Mcwi    Name updated 68913 APPROVED
2013-08-14 SS-Ncf2em4Mcwi    SS-Ncf2em4Mcwi    Name updated 68913 APPROVED
2013-08-14 SS-Ncf2em4Mcwi    SS-Ncf2em4Mcwi    Name updated 68913 APPROVED