Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: FHH.BN(D14Rat80-D14Hmgc4)/Mcwi

Symbol: FHH.BN(D14Rat80-D14Hmgc4)/Mcwi
Strain: FHH.BN(D14Rat80-D14Hmgc4)
Substrain: Mcwi
RGD ID: 5490516
Citation ID: RRID:RGD_5490516
Ontology ID: RS:0002915
Also Known As: FHH.BN(D14Rat80-D14Hmgc20)/Mcwi; FHH.BN(D14Rat80-D14Hmgc4)/Mcwi
Type: congenic
Available Source: Not Available
Origination: Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin
Description: desired segments from BN were introgressed in FHH background
Last Known Status: Live Animals; Cryopreserved Sperm
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21412,326,866 - 19,848,266RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01413,971,208 - 21,555,302RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01413,914,610 - 21,463,742RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41413,778,105 - 21,435,476RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. Howard Jacob's group Personal communication between Dr. Howard Jacob's group and the RGD curators.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D14Rat80)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21412,326,866 - 12,327,004 (+)MAPPER
Rnor_6.01413,971,208 - 13,971,345NCBI
Rnor_5.01413,914,610 - 13,914,747UniSTS
RGSC_v3.41413,778,266 - 13,778,403UniSTS
RGSC_v3.41413,778,105 - 13,778,428RGD
RGSC_v3.11413,778,105 - 13,778,428RGD
Celera1412,388,429 - 12,388,566UniSTS
RH 3.4 Map14152.99UniSTS
RH 3.4 Map14152.99RGD
RH 2.0 Map14158.6RGD
SHRSP x BN Map146.9RGD

Flank 2 / 1 (D14Hmgc4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21419,848,019 - 19,848,266 (+)MAPPER
Rnor_6.01421,555,056 - 21,555,302NCBI
Rnor_5.01421,463,496 - 21,463,742UniSTS
RGSC_v3.41421,435,230 - 21,435,476UniSTS
RGSC_v3.41421,435,229 - 21,435,476RGD
RGSC_v3.41421,383,834 - 21,384,058RGD
RGSC_v3.41421,383,835 - 21,384,058UniSTS
Celera1419,173,188 - 19,173,434UniSTS
Celera1419,122,967 - 19,123,184UniSTS
Cytogenetic Map14p22-p21UniSTS

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 FHH.BN(D14Rat80-D14Hmgc4)/Mcwi    FHH.BN(D14Rat80-D14Hmgc4)/Mcwi    Name updated 68913 APPROVED
2013-06-25 FHH.BN(D14Rat80-D14Hmgc4)/Mcwi    FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    Name updated 68913 APPROVED
2013-06-25 FHH.BN(D14Rat80-D14Hmgc4)/Mcwi    FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    Symbol updated 68687 APPROVED
2013-06-25 FHH.BN(D14Rat80-D14Hmgc4)/Mcwi    FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    Name updated 68913 APPROVED
2013-06-25 FHH.BN(D14Rat80-D14Hmgc4)/Mcwi    FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    Symbol updated 68687 APPROVED
2011-11-22 FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    BN.FHH(D14Rat80-D14Hmgc20)/Mcwi    Name updated 68913 APPROVED
2011-11-22 FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    BN.FHH(D14Rat80-D14Hmgc20)/Mcwi    Symbol updated 68687 APPROVED
2011-11-22 FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    BN.FHH(D14Rat80-D14Hmgc20)/Mcwi    Name updated 68913 APPROVED
2011-11-22 FHH.BN(D14Rat80-D14Hmgc20)/Mcwi    BN.FHH(D14Rat80-D14Hmgc20)/Mcwi    Symbol updated 68687 APPROVED