Strain Report - Rat Genome Database

Name: FHH.BN( D1Rat265-D1Rat76 )/Mcwi
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: FHH.BN(D1Rat265-D1Rat76)/Mcwi

Symbol:

FHH.BN(D1Rat265-D1Rat76)/Mcwi

Strain:

FHH.BN(D1Rat265-D1Rat76)

Substrain:

Mcwi

RGD ID:

5490515

Citation ID:

RRID:RGD_5490515

Ontology ID:

RS:0002306

Previously known as:

FHH.BN(D1Rat265-D1Rat76)/Mcwi

Type:

congenic

Source:

Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin

Origin:

desired segments from BN were introgressed in FHH background

Last Known Status:

Extinct

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	90,664,883 - 224,569,684	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	1	94,364,073 - 244,992,610	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	1	95,453,405 - 252,243,871	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	1	90,448,902 - 230,411,453	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Data registered by Dr. Howard Jacob's group	Personal communication between Dr. Howard Jacob's group and the RGD curators.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Rat265)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	90,664,883 - 90,665,040 (+)	MAPPER
Rnor_6.0	1	94,364,073 - 94,364,229	NCBI
Rnor_5.0	1	95,453,405 - 95,453,561	UniSTS
RGSC_v3.4	1	90,448,902 - 90,449,243	RGD
RGSC_v3.4	1	90,449,000 - 90,449,156	UniSTS
RGSC_v3.1	1	90,527,111 - 90,527,267	RGD
Celera	1	84,998,195 - 84,998,351	UniSTS
RH 3.4 Map	1	886.1	RGD
RH 3.4 Map	1	886.1	UniSTS
RH 2.0 Map	1	588.2	RGD
SHRSP x BN Map	1	44.5299	RGD
Cytogenetic Map	1	q22	UniSTS

Flank 2 / 1 (D1Rat76)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	224,569,538 - 224,569,684 (+)	MAPPER
Rnor_6.0	1	244,992,467 - 244,992,610	NCBI
Rnor_5.0	1	252,243,728 - 252,243,871	UniSTS
RGSC_v3.4	1	230,411,111 - 230,411,254	UniSTS
RGSC_v3.4	1	230,411,091 - 230,411,453	RGD
RGSC_v3.1	1	230,575,134 - 230,575,277	RGD
Celera	1	221,760,461 - 221,760,604	UniSTS
RH 3.4 Map	1	1612.0	RGD
RH 3.4 Map	1	1612.0	UniSTS
SHRSP x BN Map	1	125.42	UniSTS
SHRSP x BN Map	1	125.42	RGD
FHH x ACI Map	1	111.18	RGD

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2013-08-14	FHH.BN(D1Rat265-D1Rat76)/Mcwi	FHH.BN(D1Rat265-D1Rat76)/Mcwi	Name updated	68913	APPROVED
2013-08-14	FHH.BN(D1Rat265-D1Rat76)/Mcwi	FHH.BN(D1Rat265-D1Rat76)/Mcwi	Name updated	68913	APPROVED
2011-11-22	FHH.BN(D1Rat265-D1Rat76)/Mcwi	BN.FHH(D1Rat265-D1Rat76)/Mcwi	Name updated	68913	APPROVED
2011-11-22	FHH.BN(D1Rat265-D1Rat76)/Mcwi	BN.FHH(D1Rat265-D1Rat76)/Mcwi	Name updated	68913	APPROVED
2011-11-22	FHH.BN(D1Rat265-D1Rat76)/Mcwi	BN.FHH(D1Rat265-D1Rat76)/Mcwi	Symbol updated	68687	APPROVED
2011-11-22	FHH.BN(D1Rat265-D1Rat76)/Mcwi	BN.FHH(D1Rat265-D1Rat76)/Mcwi	Symbol updated	68687	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: FHH.BN(D1Rat265-D1Rat76)/Mcwi