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Strain Registration

Strain: SS-Itga9em1Mcwi

Symbol: SS-Itga9em1Mcwi
Strain: SS-Itga9em1
Substrain: Mcwi
RGD ID: 5144107
Citation ID: RRID:RGD_5144107
Ontology ID: RS:0002641
Alleles: Itga9em1Mcwi
Also Known As: SS-Itga9em1Mcwi; SS-Itga9^[em1Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence GTCGGAGCCTTCCTGTCCgacagcGTGGTTCTCCTCAGGT into SS/JrHsdMcwi rat embryos. The resulting mutation is an 87-bp deletion containing part of exon 13 and its splice acceptor.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28118,383,417 - 118,383,503RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.08127,271,029 - 127,576,709RGD_MAPPER_PIPELINERnor6.0
Rnor_5.08126,493,359 - 126,795,566RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.48123,526,904 - 123,838,241RGD_MAPPER_PIPELINERGSC3.4

Mutant Strains
SS-Itga9em1Mcwi+/+





References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Itga9em1Mcwi-var1 chr8 118383417 118383503 AGAGGGCAGCTGGGGCTGGTTTCCACAAGGTTCTGAGTCTGTGAATTCTTGTTCTCAGATGTCACCGTCGGAGCCTTCCTGTCCGAC - deletion mRatBN7.2

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Name updated 68913 APPROVED
2013-08-14 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Name updated 68913 APPROVED
2013-08-14 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Name updated 68913 APPROVED
2013-03-21 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Name updated 68913 APPROVED
2013-03-21 SS-Itga9em1Mcwi    SS-Itga9em1Mcwi    Name updated 68913 APPROVED