Strain Report - Rat Genome Database

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Strain: SS-Agtrapem4Mcwi

Symbol: SS-Agtrapem4Mcwi
Strain: SS-Agtrapem4
Substrain: Mcwi
RGD ID: 5143989
Citation ID: RRID:RGD_5143989
Ontology ID: RS:0002627
Alleles: Agtrapem4Mcwi
Also Known As: SS-Agtrapem4Mcwi; SS-Agtrap^[em4Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence ATCCTGGCCCTGGGTgtgtggGCTGTGGCCCAGCGG into SS/JrHsdMcwi rat embryos. The resulting mutation is an 84-bp mutation deleting part of exon 3 and the splice acceptor.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25158,507,427 - 158,519,036RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05164,891,661 - 164,891,744RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05168,546,202 - 168,556,520RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45165,154,252 - 165,164,570RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Agtrapem4Mcwi-var1 chr5 164891661 164891744 ACAGCCCACACACCCAGGGCCAGGATAGTGAAGTTGCCCCAAGCATAGGAGCCTGAGAACGCCAAGCAGCCCCTGCATAGAGAG - deletion Rnor_6.0

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-26 SS-Agtrapem4Mcwi    SS-Agtrapem4Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Agtrapem4Mcwi    SS-Agtrapem4Mcwi    Symbol updated 68687 APPROVED
2014-03-26 SS-Agtrapem4Mcwi    SS-Agtrapem4Mcwi    Name updated 68913 APPROVED
2014-03-26 SS-Agtrapem4Mcwi    SS-Agtrapem4Mcwi    Symbol updated 68687 APPROVED
2013-08-14 SS-Agtrapem4Mcwi    SS-Agtrapem4Mcwi    Name updated 68913 APPROVED