Strain Report - Rat Genome Database

Name: WF.WKY-( D7Uwm25-D7Rat128 )/Uwm
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: WF.WKY-(D7Uwm25-D7Rat128)/Uwm

Symbol:

WF.WKY-(D7Uwm25-D7Rat128)/Uwm

Strain:

WF.WKY-(D7Uwm25-D7Rat128)2

Substrain:

Uwm

RGD ID:

5134689

Citation ID:

RRID:RGD_5134689

Ontology ID:

RS:0002607

Previously known as:

WF.WKY-(D7Uwm25-D7Rat128)/Uwm; WF.WKy congenic line E

Type:

congenic

Source:

University of Wisconsin, Madison, Wisconsin, USA

Origin:

Chromosome 7 segment from WKY that had the Mcs6 QTL was introgressed into a WF genetic background

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	81,134,174 - 114,528,048	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	7	89,283,487 - 124,246,733	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	7	89,318,050 - 124,236,725	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	7	121,523,977 - 121,524,220	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Mammary Neoplasms (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased mammary adenocarcinoma incidence (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

mammary tumor number

References

References - curated

#	Reference Title	Reference Citation
1.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines
2.	Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6.	Sanders J, etal., PLoS One. 2011;6(5):e19891. Epub 2011 May 18.

Region

Position Markers

Flank 1 / 1 (D7Uwm25)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	81,134,174 - 81,134,459 (+)	MAPPER
Rnor_6.0	7	89,283,487 - 89,283,769	NCBI
Rnor_5.0	7	89,318,050 - 89,318,332	UniSTS
Celera	7	78,024,217 - 78,024,499	UniSTS
Cytogenetic Map	7		RGD

Flank 2 / 1 (D7Rat128)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	114,527,811 - 114,528,048 (+)	MAPPER
Rnor_6.0	7	124,246,491 - 124,246,733	NCBI
Rnor_5.0	7	124,236,483 - 124,236,725	UniSTS
RGSC_v3.4	7	121,523,977 - 121,524,220	RGD
RGSC_v3.4	7	121,523,978 - 121,524,220	UniSTS
RGSC_v3.1	7	121,558,207 - 121,558,450	RGD
Celera	7	110,841,297 - 110,841,485	UniSTS
SHRSP x BN Map	7	66.86	RGD
SHRSP x BN Map	7	66.86	UniSTS
Cytogenetic Map	7	q34	UniSTS

Additional Information

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-06	WF.WKY-(D7Uwm25-D7Rat128)/Uwm		WF.WKY-(D7Uwm25-D7Rat128)/Uwm		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: WF.WKY-(D7Uwm25-D7Rat128)/Uwm

Mammalian Phenotype

Related Phenotype Data for Term "WF.WKY-(D7Uwm25-D7Rat128)/Uwm" (RS:0002607)