Strain Report - Rat Genome Database

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Strain: SS-Cdh13em1Mcwi

Symbol: SS-Cdh13em1Mcwi
Strain: SS-Cdh13em1
Substrain: Mcwi
RGD ID: 5131922
Citation ID: RRID:RGD_5131922
Ontology ID: RS:0002583
Alleles: Cdh13em1Mcwi
Also Known As: SS-Cdh13em1Mcwi; SS-Cdh13^[em1Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CTCACCCTGTGCGTCctgctgTCCCAGGTAGGGAATG into SS/JrHsdMcwi rat embryos. The resulting mutation is an 8-bp frameshift deletion in exon 1.
Last Known Status: Cryopreserved Sperm (as of 2021-11-03)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21946,349,562 - 47,387,462RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01950,848,896 - 50,848,903RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01961,621,434 - 62,720,155RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41948,507,173 - 49,575,123RGD_MAPPER_PIPELINERGSC3.4





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Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. Cdh13 and AdipoQ gene knockout alter instrumental and Pavlovian drug conditioning. King CP, etal., Genes Brain Behav. 2017 Sep;16(7):686-698. doi: 10.1111/gbb.12382. Epub 2017 May 2.
3. PhysGen Knockouts PhysGen Knockout strains
4. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Cdh13em1Mcwi-var1 chr19 50848896 50848903 CTGCTGTC - deletion Rnor_6.0

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-25 SS-Cdh13em1Mcwi    SS-Cdh13em1Mcwi    Name updated 68913 APPROVED
2014-03-25 SS-Cdh13em1Mcwi    SS-Cdh13em1Mcwi    Symbol updated 68687 APPROVED
2014-03-25 SS-Cdh13em1Mcwi    SS-Cdh13em1Mcwi    Name updated 68913 APPROVED
2014-03-25 SS-Cdh13em1Mcwi    SS-Cdh13em1Mcwi    Symbol updated 68687 APPROVED
2013-08-13 SS-Cdh13em1Mcwi    SS-Cdh13em1Mcwi    Name updated 68913 APPROVED