Strain Report - Rat Genome Database

Name: LEW.SS-( D7Rat73-D7Rat128 )/Ayd
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: LEW.SS-(D7Rat73-D7Rat128)/Ayd

Symbol:

LEW.SS-(D7Rat73-D7Rat128)/Ayd

Strain:

LEW.SS-(D7Rat73-D7Rat128)

Substrain:

Ayd

RGD ID:

4891051

Citation ID:

RRID:RGD_4891051

Ontology ID:

RS:0000301

Alleles:

Avpr1a; Cyp11b1; Cyp11b2; Tac3; Cyp11b3; Cox6c; Kcnv1; Kcns2; Nxph4; Trhr

Previously known as:

LEW.SS-(D7Rat73-D7Rat128)/Ayd; Lewis.DSS-(D7Rat73-D7Rat128)/Lt; C7L.S

Type:

congenic

Source:

Research Centre, Centre Hospitalier de l'Universite de Monteal (CHUM), Quebec, Canada

Origin:

LEW/Crlc and SS/Jr were backcrossed for 5 generations, then BC5 rat was mated with LEW/Crlc to produce the desired congenic strain

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	53,612,714 - 114,528,048	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	7	61,047,589 - 124,246,733	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	7	61,044,919 - 124,236,725	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	7	57,326,196 - 121,524,220	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "LEW.SS-(D7Rat73-D7Rat128)/Ayd" (RS:0000301)

Rat Strains:

LEW.SS-(D7Rat73-D7Rat128)/Ayd

Clinical Measurements:

mean arterial blood pressure

Experimental Conditions:

controlled sodium content diet

Measurement Methods:

intra-aortic abdominal radiotelemetry

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

mean arterial blood pressure

References

References - curated

#	Reference Title	Reference Citation
1.	Normotension in Lewis and Dahl salt-resistant rats is governed by different genes.	Crespo K, etal., J Hypertens. 2011 Mar;29(3):460-5.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D7Rat73)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	53,612,714 - 53,612,950 (+)	MAPPER
Rnor_6.0	7	61,047,589 - 61,047,824	NCBI
Rnor_5.0	7	61,044,919 - 61,045,154	UniSTS
RGSC_v3.4	7	57,326,197 - 57,326,432	UniSTS
RGSC_v3.4	7	57,326,196 - 57,326,584	RGD
RGSC_v3.1	7	57,346,927 - 57,347,162	RGD
Celera	7	50,381,645 - 50,381,880	UniSTS
RH 3.4 Map	7	487.7	RGD
RH 3.4 Map	7	487.7	UniSTS
RH 2.0 Map	7	413.2	RGD
SHRSP x BN Map	7	33.28	RGD
FHH x ACI Map	7	32.32	RGD
Cytogenetic Map	7	q22	UniSTS

Flank 2 / 1 (D7Rat128)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	7	114,527,811 - 114,528,048 (+)	MAPPER
Rnor_6.0	7	124,246,491 - 124,246,733	NCBI
Rnor_5.0	7	124,236,483 - 124,236,725	UniSTS
RGSC_v3.4	7	121,523,977 - 121,524,220	RGD
RGSC_v3.4	7	121,523,978 - 121,524,220	UniSTS
RGSC_v3.1	7	121,558,207 - 121,558,450	RGD
Celera	7	110,841,297 - 110,841,485	UniSTS
SHRSP x BN Map	7	66.86	RGD
SHRSP x BN Map	7	66.86	UniSTS
Cytogenetic Map	7	q34	UniSTS

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LEW.SS-(D7Rat73-D7Rat128)/Ayd

Related Phenotype Data for Term "LEW.SS-(D7Rat73-D7Rat128)/Ayd" (RS:0000301)