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Strain: LE-Scn2aem1Mcwi

Symbol: LE-Scn2aem1Mcwi
Strain: LE-Scn2aem1
Substrain: Mcwi
RGD ID: 25394530
Citation ID: RRID:RGD_25394530
Ontology ID: RS:0004785
Alleles: Scn2aem1Mcwi
Also Known As: LE-Scn2a^[em1Mcwi]
Type: mutant
Available Source: Contact MCW rat distribution at mcwcustomrats@mcw.edu
Origination: MCW Gene Editing Rat Resource Center
Description: The rat strain was produced by injecting CRISPR/Cas9 targeting rat Scn2a into Crl:LE embryos. The mutant allele was produced by injecting CRISPR/Cas9 targeting rat Scn2a into Crl:LE embryos. The resulting mutation is net 4-bp deletion in exon 5 comprising a 10-bp deletion (shown in lower case: CTACGGGATccctggaattGGTTGGATTTCACAGTCATT ) and a 6-bp insertion (TTCACT).
Last Known Status: Live Animals (as of 2021-11-03)
Genotyping Protocol Download Genotyping Protocol
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,302,781 - 50,437,504RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0351,749,425 - 51,749,430RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0358,322,640 - 58,456,658RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4347,588,413 - 47,722,800RGD_MAPPER_PIPELINERGSC3.4






References

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Scn2aem1Mcwi-var1 chr3 51749425 51749430 CTGGAA - deletion Rnor_6.0

Additional Information