Strain Report - Rat Genome Database

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Strain: SHR.SS-(D8Uia1-D8Rat90)/Mco

Symbol: SHR.SS-(D8Uia1-D8Rat90)/Mco
Strain: SHR.SS-(D8Uia1-D8Rat90)
Substrain: Mco
RGD ID: 2314532
Citation ID: RRID:RGD_2314532
Ontology ID: RS:0002163
Previously known as: SHR.S(8);SHR.SS-(D8Uia1-D8Rat90)/Mco; SHR.SS-(D8Uia1-D8Rat90)/Mco
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio
Origin: SS/Jr females were bred with SHR/NHsd males and their male F1 were backcrossed to SHR/NHsd females; this ensured that the mitochondrial genome came from SHR/NHsd; further selection was done using microsatellite markers
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28110,572,032 - 110,572,221RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.08118,862,625 - 118,862,813RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0820,954,930 - 118,204,000RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4819,055,857 - 114,974,688RGD_MAPPER_PIPELINERGSC3.4

Disease Annotations     Click to see Annotation Detail View
proteinuria  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Investigating the effect of genetic background on proteinuria and renal injury using two hypertensive strains. Packard M, etal., Am J Physiol Renal Physiol. 2009 Apr;296(4):F839-46. Epub 2009 Jan 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D8Uia1)
Rat AssemblyChrPosition (strand)Source
Rnor_5.0821,206,669 - 21,207,002NCBI
Rnor_5.0820,954,931 - 20,955,263NCBI
Rnor_5.0821,206,670 - 21,207,002NCBI
Rnor_5.0820,954,930 - 20,955,263NCBI
RGSC_v3.4819,055,857 - 19,056,189RGD
RGSC_v3.4819,055,858 - 19,056,189UniSTS
RGSC_v3.1819,055,857 - 19,056,189RGD
Celera820,111,996 - 20,112,252UniSTS
Celera819,999,688 - 20,000,019UniSTS
Cytogenetic Map8q13UniSTS

Flank 2 / 1 (D8Rat90)
Rat AssemblyChrPosition (strand)Source
mRatBN7.28110,572,032 - 110,572,221 (+)MAPPER
Rnor_6.08118,862,625 - 118,862,813NCBI
Rnor_5.08118,203,812 - 118,204,000UniSTS
RGSC_v3.48114,974,499 - 114,974,688RGD
RGSC_v3.48114,974,500 - 114,974,688UniSTS
RGSC_v3.18114,993,954 - 114,994,143RGD
Celera8109,856,234 - 109,856,422UniSTS
SHRSP x BN Map871.8999RGD
SHRSP x BN Map871.8999UniSTS
Cytogenetic Map8q32UniSTS

Additional Information