Strain Report - Rat Genome Database

Name: SHR.SS-( D13Rat1-D13Mgh6 )/Mco
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SHR.SS-(D13Rat1-D13Mgh6)/Mco

Symbol:

SHR.SS-(D13Rat1-D13Mgh6)/Mco

Strain:

SHR.SS-(D13Rat1-D13Mgh6)

Substrain:

Mco

RGD ID:

2314531

Citation ID:

RRID:RGD_2314531

Ontology ID:

RS:0002162

Previously known as:

SHR.SS-(D13Rat1-D13Mgh6)/Mco;SHR.S(13); SHR.SS-(D13Rat1-D13Mgh6)/Mco

Type:

congenic

Source:

Medical College of Ohio, Toledo, Ohio

Origin:

SS/Jr females were bred with SHR/NHsd males and their male F₁ were backcrossed to SHR/NHsd females; this ensured that the mitochondrial genome came from SHR/NHsd; further selection was done using microsatellite markers

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	20,605,555 - 97,213,863	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	13	24,501,968 - 103,613,733	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	13	29,679,984 - 108,279,142	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	13	10,555,730 - 101,704,301	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

proteinuria (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

increased urine protein level (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Clinical Measurement

body weight

heart wet weight

both kidneys wet weight

serum triglyceride level

serum total cholesterol level

blood uric acid level

serum albumin level

References

References - curated

#	Reference Title	Reference Citation
1.	Investigating the effect of genetic background on proteinuria and renal injury using two hypertensive strains.	Packard M, etal., Am J Physiol Renal Physiol. 2009 Apr;296(4):F839-46. Epub 2009 Jan 28.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D13Rat1)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	20,605,555 - 20,605,871 (+)	MAPPER
Rnor_6.0	13	24,501,968 - 24,502,279	NCBI
Rnor_5.0	13	29,679,984 - 29,680,295	UniSTS
RGSC_v3.4	13	10,555,730 - 10,556,042	RGD
RGSC_v3.4	13	10,555,731 - 10,556,042	UniSTS
RGSC_v3.1	13	10,555,692 - 10,556,042	RGD
Celera	13	20,557,718 - 20,557,989	UniSTS
FHH x ACI Map	13	5.65	UniSTS
FHH x ACI Map	13	5.65	RGD

Flank 2 / 1 (D13Mgh6)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	97,213,755 - 97,213,863 (+)	MAPPER
Rnor_6.0	13	103,613,626 - 103,613,733	NCBI
Rnor_5.0	13	108,279,035 - 108,279,142	UniSTS
RGSC_v3.4	13	101,704,194 - 101,704,301	UniSTS
RGSC_v3.4	13	101,704,193 - 101,704,301	RGD
RGSC_v3.1	13	101,893,236 - 101,893,344	RGD
Celera	13	96,726,130 - 96,726,237	UniSTS
RH 3.4 Map	13	656.7	UniSTS
RH 3.4 Map	13	656.7	RGD
RH 2.0 Map	13	716.2	RGD
Cytogenetic Map	13		RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SHR.SS-(D13Rat1-D13Mgh6)/Mco

Mammalian Phenotype

Related Phenotype Data for Term "SHR.SS-(D13Rat1-D13Mgh6)/Mco" (RS:0002162)