Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SHR.SS-(D13Rat1-D13Mgh6)/Mco

Symbol: SHR.SS-(D13Rat1-D13Mgh6)/Mco
Strain: SHR.SS-(D13Rat1-D13Mgh6)
Substrain: Mco
RGD ID: 2314531
Citation ID: RRID:RGD_2314531
Ontology ID: RS:0002162
Previously known as: SHR.SS-(D13Rat1-D13Mgh6)/Mco;SHR.S(13); SHR.SS-(D13Rat1-D13Mgh6)/Mco
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio
Origin: SS/Jr females were bred with SHR/NHsd males and their male F1 were backcrossed to SHR/NHsd females; this ensured that the mitochondrial genome came from SHR/NHsd; further selection was done using microsatellite markers
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21320,605,555 - 97,213,863RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01324,501,968 - 103,613,733RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01329,679,984 - 108,279,142RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41310,555,730 - 101,704,301RGD_MAPPER_PIPELINERGSC3.4

Disease Annotations     Click to see Annotation Detail View
proteinuria  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Investigating the effect of genetic background on proteinuria and renal injury using two hypertensive strains. Packard M, etal., Am J Physiol Renal Physiol. 2009 Apr;296(4):F839-46. Epub 2009 Jan 28.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D13Rat1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21320,605,555 - 20,605,871 (+)MAPPER
Rnor_6.01324,501,968 - 24,502,279NCBI
Rnor_5.01329,679,984 - 29,680,295UniSTS
RGSC_v3.41310,555,730 - 10,556,042RGD
RGSC_v3.41310,555,731 - 10,556,042UniSTS
RGSC_v3.11310,555,692 - 10,556,042RGD
Celera1320,557,718 - 20,557,989UniSTS
FHH x ACI Map135.65UniSTS
FHH x ACI Map135.65RGD

Flank 2 / 1 (D13Mgh6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21397,213,755 - 97,213,863 (+)MAPPER
Rnor_6.013103,613,626 - 103,613,733NCBI
Rnor_5.013108,279,035 - 108,279,142UniSTS
RGSC_v3.413101,704,194 - 101,704,301UniSTS
RGSC_v3.413101,704,193 - 101,704,301RGD
RGSC_v3.113101,893,236 - 101,893,344RGD
Celera1396,726,130 - 96,726,237UniSTS
RH 3.4 Map13656.7UniSTS
RH 3.4 Map13656.7RGD
RH 2.0 Map13716.2RGD
Cytogenetic Map13 RGD

Additional Information