Strain Report - Rat Genome Database

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Strain: SHR.BN-(D4Rat33-D4Rat54)/Jk

Symbol: SHR.BN-(D4Rat33-D4Rat54)/Jk
Strain: SHR.BN-(D4Rat33-D4Rat54)
Substrain: Jk
RGD ID: 2306894
RRID: RGD_2306894
Ontology ID: RS:0002156
Also known as: SHR.BN4; SHR.BN-(D4Rat33-D4Rat54)/Jk; SHR.BN-(D4Rat33-D4Rat54)/Jk
Type: congenic
Source: Heart Institute (InCor), University of Sao Paulo Medical School, Sao Paulo, Brazil. Genetica
Origin: Backcross marker-assisted method was used to fix the BN fragment onto SHR genome, once selection was done using markers, male and female were crossed to get homozygous animals
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0481,874,073 - 119,546,974RGD_MAPPER_PIPELINERnor6.0
Rnor_5.04146,540,904 - 184,799,673RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4480,205,349 - 121,829,076RGD_MAPPER_PIPELINERGSC3.4






Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
1. Aneas I, etal., Physiol Genomics. 2009 Mar 3;37(1):52-7. Epub 2009 Jan 6.
2. RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Rat33)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0481,874,073 - 81,874,227NCBI
Rnor_5.04146,540,904 - 146,541,058UniSTS
RGSC_v3.4480,205,349 - 80,205,504RGD
RGSC_v3.4480,205,350 - 80,205,504UniSTS
RGSC_v3.1480,481,479 - 80,481,634RGD
Celera475,898,515 - 75,898,669UniSTS
RH 3.4 Map4512.42UniSTS
RH 3.4 Map4512.42RGD
RH 2.0 Map4546.7RGD
SHRSP x BN Map440.85RGD
FHH x ACI Map447.95RGD
Cytogenetic Map4q24UniSTS

Flank 2 / 1 (D4Rat54)
Rat AssemblyChrPosition (strand)Source
Rnor_6.04119,546,804 - 119,546,974NCBI
Rnor_5.04184,799,503 - 184,799,673UniSTS
RGSC_v3.44121,828,906 - 121,829,076UniSTS
RGSC_v3.44121,828,905 - 121,829,076RGD
RGSC_v3.14122,073,386 - 122,073,557RGD
Celera4109,069,673 - 109,069,839UniSTS
RH 3.4 Map4710.5RGD
RH 3.4 Map4710.5UniSTS
RH 2.0 Map4739.9RGD
SHRSP x BN Map456.08RGD
Cytogenetic Map4q34UniSTS
Strain QTL Data
Symbol Name Trait
Bp338 Blood pressure QTL 338 arterial blood pressure trait   (VT:2000000)    

Additional Information