Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SHRSP.WKY-(D1Wox18-D1Rat39)/Izm

Symbol: SHRSP.WKY-(D1Wox18-D1Rat39)/Izm
Strain: SHRSP.WKY-(D1Wox18-D1Rat39)
Substrain: Izm
RGD ID: 2305968
Citation ID: RRID:RGD_2305968
Ontology ID: RS:0002523
Also Known As: SHRSP.WKY-(D1Wox18-D1Rat39)/Izm; SHRSPwch1.16; NBRP Rat No: 0396; SHRSP.WKY-(D1Wox18-D1Rat39)/Izm
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: Developed by the DEPOSITOR
Last Known Status: Cryopreserved Sperm
Research Usage Diabetes Obesity
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,644,435 - 124,668,572RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01100,133,276 - 132,134,441RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01101,198,387 - 133,172,336RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4194,626,541 - 125,983,558RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Wox18)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2194,644,435 - 94,644,553 (+)MAPPER
Rnor_6.01100,133,276 - 100,133,395NCBI
Rnor_5.01101,198,387 - 101,198,506UniSTS
RGSC_v3.4194,626,541 - 94,626,661RGD
RGSC_v3.4194,626,542 - 94,626,661UniSTS
RGSC_v3.1194,704,652 - 94,704,772RGD
Celera188,911,307 - 88,911,426UniSTS
RH 3.4 Map1906.0UniSTS
RH 3.4 Map1906.0RGD
RH 2.0 Map1581.8RGD
Cytogenetic Map1q22UniSTS

Flank 2 / 1 (D1Rat39)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21124,668,437 - 124,668,572 (+)MAPPER
Rnor_6.01132,134,307 - 132,134,441NCBI
Rnor_5.01133,172,202 - 133,172,336UniSTS
RGSC_v3.41125,983,422 - 125,983,558RGD
RGSC_v3.41125,983,423 - 125,983,557UniSTS
RGSC_v3.11126,061,765 - 126,061,901RGD
Celera1116,826,236 - 116,826,370UniSTS
RH 3.4 Map1975.9UniSTS
RH 3.4 Map1975.9RGD
RH 2.0 Map1663.9RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-16 SHRSP.WKY-(D1Wox18-D1Rat39)/Izm    SHRSP.WKY-(D1Wox18-D1Rat39)/Izm    Name updated 68913 APPROVED
2012-05-16 SHRSP.WKY-(D1Wox18-D1Rat39)/Izm    SHRSP.WKY-(D1Wox18-D1Rat39)/Izm    Name updated 68913 APPROVED