Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: BUF.ACI-(D20Img2-D20Rat5)/Ncc

Symbol: BUF.ACI-(D20Img2-D20Rat5)/Ncc
Strain: BUF.ACI-(D20Img2-D20Rat5)
Substrain: Ncc
RGD ID: 2304290
Citation ID: RRID:RGD_2304290
Ontology ID: RS:0001809
Also Known As: BUF.ACI-(D20Img2-D20Rat5)/Ncc; B20-1; NBRP Rat No: 0296; BUF.ACI-(D20Img2-D20Rat5)/Ncc
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: Developed by the DEPOSITOR
Coat Color: Albino
Inbred Generations: F4
Last Known Status: Unknown
Research Usage Cancer
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22017,617,832 - 17,617,956RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02018,872,150 - 18,872,273RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02021,025,611 - 21,025,734RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42018,411,845 - 18,411,969RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Expression Quantitative Trait Loci Analysis of 13 Genes in the Rat Prostate. Yamashita S, etal., Genetics 2005 Aug 3;.

Region

Position Markers

Flank 2 / 1 (D20Rat5)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22017,617,832 - 17,617,956 (+)MAPPER
Rnor_6.02018,872,150 - 18,872,273NCBI
Rnor_5.02021,025,611 - 21,025,734UniSTS
RGSC_v3.42018,411,846 - 18,411,969UniSTS
RGSC_v3.42018,411,845 - 18,411,969RGD
RGSC_v3.12018,425,634 - 18,426,179RGD
Celera2019,015,307 - 19,015,430UniSTS
RH 2.0 Map20258.6RGD
SHRSP x BN Map2016.6599RGD
FHH x ACI Map209.1099RGD
Cytogenetic Map20p11UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction Good breeding performance. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-16 BUF.ACI-(D20Img2-D20Rat5)/Ncc    BUF.ACI-(D20Img2-D20Rat5)/Ncc    Name updated 68913 APPROVED