Strain Report - Rat Genome Database

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Strain: DA.WF-(D4Mit11-Nos3)/Kop

Symbol: DA.WF-(D4Mit11-Nos3)/Kop
Strain: DA.WF-(D4Mit11-Nos3)
Substrain: Kop
RGD ID: 2304123
Citation ID: RRID:RGD_2304123
Ontology ID: RS:0001851
Previously known as: DA.WF-(D4Mit11-Nos3)/Kop; DA.WF-Tcas3/Kop; DA.WF-Tcas3/Kop; DA.WF-Tscc4; DWTscc4; NBRP Rat No: 0268; DA.WF-(D4Mit11-Nos3)/Kop
Type: congenic
Source: National BioResource Project for the Rat in Japan
Origin: This congenic strain in the DA background by introgressing a segment from WF
Coat Color: Agouti
Inbred Generations: F20
Last Known Status: Cryopreserved Embryo
Research Usage Cancer
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2410,793,834 - 91,360,801RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.047,321,908 - 92,484,312RGD_MAPPER_PIPELINERnor6.0
Rnor_5.047,333,272 - 157,291,359RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.446,158,847 - 91,330,856RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Quantitative trait loci affecting 4-nitroquinoline 1-oxide-induced tongue carcinogenesis in the rat. Tanuma J, etal., Cancer Res 1998 Apr 15;58(8):1660-4
4. Carcinogenesis modifier loci in rat tongue are subject to frequent loss of heterozygosity. Tanuma J, etal., Int J Cancer 2002 Dec 20;102(6):638-42.

Region

Position Markers

Flank 1 / 1 (D4Mit11)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2491,360,527 - 91,360,801 (+)MAPPER
Rnor_6.0492,484,039 - 92,484,312NCBI
Rnor_5.04157,291,086 - 157,291,359UniSTS
RGSC_v3.4491,330,582 - 91,330,856RGD
RGSC_v3.4491,330,583 - 91,330,856UniSTS
RGSC_v3.1491,575,008 - 91,575,281RGD
Celera486,134,746 - 86,135,019UniSTS
RH 3.4 Map4577.9UniSTS
RH 3.4 Map4577.9RGD
RH 2.0 Map4591.5RGD
Cytogenetic Map5q36UniSTS

Flank 2 / 1 (Nos3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2410,793,834 - 10,814,170 (-)NCBI
mRatBN7.2 Ensembl410,793,834 - 10,814,166 (-)Ensembl
UTH_Rnor_SHR_Utx415,940,095 - 15,960,412 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0411,760,284 - 11,780,599 (-)NCBI
UTH_Rnor_WKY_Bbb_1.0410,112,074 - 10,132,387 (-)NCBI
Rnor_6.047,321,908 - 7,342,404 (-)NCBI
Rnor_6.0 Ensembl47,320,668 - 7,342,410 (-)Ensembl
Rnor_5.047,333,272 - 7,353,767 (-)NCBI
RGSC_v3.446,158,847 - 6,179,441 (-)NCBI
RGSC_v3.146,158,846 - 6,179,441 (-)NCBI
Celera46,408,408 - 6,428,650 (-)NCBI
Cytogenetic Map4q11NCBI

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-15 DA.WF-(D4Mit11-Nos3)/Kop    DA.WF-(D4Mit11-Nos3)/Kop    Name updated 68913 APPROVED
2012-05-15 DA.WF-(D4Mit11-Nos3)/Kop    DA.WF-(D4Mit11-Nos3)/Kop    Name updated 68913 APPROVED