Strain Report - Rat Genome Database

Name: F344.OLETF-( D9Mgh8-D9Mit2 )/Tj
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: F344.OLETF-(D9Mgh8-D9Mit2)/Tj

Symbol:

F344.OLETF-(D9Mgh8-D9Mit2)/Tj

Strain:

F344.OLETF-(D9Mgh8-D9Mit2)

Substrain:

RGD ID:

2303989

Citation ID:

RRID:RGD_2303989

Ontology ID:

RS:0001988

Previously known as:

F344.OLETF-(D9Mgh8-D9Mit2)/Tj; F.O-Nidd8/of; F.O-Nidd8/of; NBRP Rat No: 0067; F344.OLETF-(D9Mgh8-D9Mit2)/Tj

Type:

congenic

Source:

National BioResource Project for the Rat in Japan

Origin:

Established as speed congenics (5 generations, microsatellite marker) at the University of Tokushima School of Medicine, Institute for Animal Experimentation in 1998. Afterwards, maintained by sib mating.

Inbred Generations:

F11

Last Known Status:

Cryopreserved Embryo

Research Usage

Diabetes Obesity

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	36,840,385 - 66,437,242	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	9	41,139,089 - 71,771,476	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	9	40,808,491 - 70,797,404	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	9	33,374,546 - 63,705,951	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Examination of OLETF-derived non-insulin-dependent diabetes mellitus QTL by construction of a series of congenic rats.	Kose H, etal., Mamm Genome 2002 Oct;13(10):558-62.
2.	Strains registered by the National Bio Resource Project for the Rat in Japan	Personal Communication with NBRP
3.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D9Mgh8)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	36,840,385 - 36,840,608 (+)	MAPPER
Rnor_6.0	9	41,139,089 - 41,139,311	NCBI
Rnor_5.0	9	40,808,491 - 40,808,713	UniSTS
RGSC_v3.4	9	33,374,546 - 33,374,769	RGD
RGSC_v3.4	9	33,374,547 - 33,374,769	UniSTS
RGSC_v3.1	9	33,375,961 - 33,376,183	RGD
Celera	9	34,625,350 - 34,625,572	UniSTS
RH 3.4 Map	9	352.1	UniSTS
RH 3.4 Map	9	352.1	RGD
RH 2.0 Map	9	355.0	RGD
Cytogenetic Map	9	q21	UniSTS

Flank 2 / 1 (D9Mit2)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	66,437,052 - 66,437,242 (+)	MAPPER
Rnor_6.0	9	71,771,288 - 71,771,476	NCBI
Rnor_5.0	9	70,797,216 - 70,797,404	UniSTS
RGSC_v3.4	9	63,705,761 - 63,705,951	RGD
RGSC_v3.4	9	63,705,762 - 63,705,951	UniSTS
RGSC_v3.1	9	63,852,743 - 63,852,933	RGD
Celera	9	63,832,694 - 63,832,883	UniSTS
RH 3.4 Map	9	588.2	UniSTS
RH 3.4 Map	9	588.2	RGD
RH 2.0 Map	9	632.5	RGD
SHRSP x BN Map	9	45.5498	RGD
FHH x ACI Map	9	42.29	RGD
Cytogenetic Map	9		RGD

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_phys_biochem	Good breeding performance.	1302502

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-05-08	F344.OLETF-(D9Mgh8-D9Mit2)/Tj		F344.OLETF-(D9Mgh8-D9Mit2)/Tj		Name updated	68913	APPROVED
2012-05-08	F344.OLETF-(D9Mgh8-D9Mit2)/Tj		F344.OLETF-(D9Mgh8-D9Mit2)/Tj		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: F344.OLETF-(D9Mgh8-D9Mit2)/Tj