Strain Report - Rat Genome Database

Name: SPRD.WKY-( D10Rat91-D10Rat135 )/Ibmm
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm

Symbol:

SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm

Strain:

SPRD.WKY-(D10Rat91-D10Rat135)

Substrain:

Ibmm

RGD ID:

2303116

Citation ID:

RRID:RGD_2303116

Ontology ID:

RS:0002196

Previously known as:

SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm;SPRD-Cu3.WKY-D10Rat91/D10Rat135;SPRD-Cu3.WKY-Mcsta1;C10.Mcsta1; SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm

Type:

congenic

Source:

Universite Libre de Bruxelles, Institut de Biologie et de Medecine Moleculaires, Gosselies, Belgium

Origin:

SPRD/HanZtm were crossed with WKY/HanZtm and F1 males were backcrossed with SPRD/HanZtm. Heterozygous carriers were bred to SPRD/HanZtm.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	9,658,275 - 104,670,812	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	9,841,807 - 108,540,162	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	8,619,955 - 108,145,987	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	9,762,188 - 108,776,963	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Mammary Neoplasms (IAGP)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased tumor growth/size (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

mammary tumor number

mammary tumor growth rate

References

References - curated

#	Reference Title	Reference Citation
1.	Contrasting epistatic interactions between rat quantitative trait loci controlling mammary cancer development.	Piessevaux G, etal., Mamm Genome. 2008 Dec 4.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat91)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	9,658,275 - 9,658,394 (+)	MAPPER
Rnor_6.0	10	9,841,807 - 9,841,925	NCBI
Rnor_5.0	10	8,619,955 - 8,620,073	UniSTS
RGSC_v3.4	10	9,762,188 - 9,762,307	RGD
RGSC_v3.4	10	9,762,189 - 9,762,307	UniSTS
RGSC_v3.1	10	9,762,188 - 9,762,307	RGD
Celera	10	8,630,041 - 8,630,159	UniSTS
RH 2.0 Map	10	19.7	RGD
SHRSP x BN Map	10	5.71	RGD
FHH x ACI Map	10	7.84	RGD

Flank 2 / 1 (D10Rat135)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	104,670,657 - 104,670,812 (+)	MAPPER
Rnor_6.0	10	108,540,008 - 108,540,162	NCBI
Rnor_5.0	10	108,145,833 - 108,145,987	UniSTS
RGSC_v3.4	10	108,776,808 - 108,776,963	RGD
RGSC_v3.4	10	108,776,809 - 108,776,963	UniSTS
RGSC_v3.1	10	108,791,287 - 108,791,662	RGD
Celera	10	103,216,256 - 103,216,410	UniSTS
RH 2.0 Map	10	1397.5	RGD
SHRSP x BN Map	10	94.1199	RGD
Cytogenetic Map	10	q32.3	UniSTS

Strain QTL Data

Symbol	Name	Trait
Mamtr7	Mammary tumor resistance QTL 7	mammary gland integrity trait (VT:0010552)

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_other	This is almost a consomic strain but lacks the WKY allele	2302423

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm

Mammalian Phenotype

Related Phenotype Data for Term "SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm" (RS:0002196)