Strain Report - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm

Symbol: SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm
Strain: SPRD.WKY-(D10Rat91-D10Rat135)
Substrain: Ibmm
RGD ID: 2303116
Citation ID: RRID:RGD_2303116
Ontology ID: RS:0002196
Previously known as: SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm;SPRD-Cu3.WKY-D10Rat91/D10Rat135;SPRD-Cu3.WKY-Mcsta1;C10.Mcsta1; SPRD.WKY-(D10Rat91-D10Rat135)/Ibmm
Type: congenic
Source: Universite Libre de Bruxelles, Institut de Biologie et de Medecine Moleculaires, Gosselies, Belgium
Origin: SPRD/HanZtm were crossed with WKY/HanZtm and F1 males were backcrossed with SPRD/HanZtm. Heterozygous carriers were bred to SPRD/HanZtm.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2109,658,275 - 104,670,812RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0109,841,807 - 108,540,162RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0108,619,955 - 108,145,987RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4109,762,188 - 108,776,963RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References

References - curated
# Reference Title Reference Citation
1. Contrasting epistatic interactions between rat quantitative trait loci controlling mammary cancer development. Piessevaux G, etal., Mamm Genome. 2008 Dec 4.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat91)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2109,658,275 - 9,658,394 (+)MAPPER
Rnor_6.0109,841,807 - 9,841,925NCBI
Rnor_5.0108,619,955 - 8,620,073UniSTS
RGSC_v3.4109,762,188 - 9,762,307RGD
RGSC_v3.4109,762,189 - 9,762,307UniSTS
RGSC_v3.1109,762,188 - 9,762,307RGD
Celera108,630,041 - 8,630,159UniSTS
RH 2.0 Map1019.7RGD
SHRSP x BN Map105.71RGD
FHH x ACI Map107.84RGD

Flank 2 / 1 (D10Rat135)
Rat AssemblyChrPosition (strand)Source
mRatBN7.210104,670,657 - 104,670,812 (+)MAPPER
Rnor_6.010108,540,008 - 108,540,162NCBI
Rnor_5.010108,145,833 - 108,145,987UniSTS
RGSC_v3.410108,776,808 - 108,776,963RGD
RGSC_v3.410108,776,809 - 108,776,963UniSTS
RGSC_v3.110108,791,287 - 108,791,662RGD
Celera10103,216,256 - 103,216,410UniSTS
RH 2.0 Map101397.5RGD
SHRSP x BN Map1094.1199RGD
Cytogenetic Map10q32.3UniSTS
Strain QTL Data
Symbol Name Trait
Mamtr7 Mammary tumor resistance QTL 7 mammary gland integrity trait   (VT:0010552)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other This is almost a consomic strain but lacks the WKY allele 2302423