Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo

Symbol: SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo
Strain: SHRSP.WKY-(D3Mgh16-D3Rat110)
Substrain: Tkyo
RGD ID: 2290280
Citation ID: RRID:RGD_2290280
Ontology ID: RS:0001440
Also Known As: SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo; SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo; SHRSP.WKY-(D3Mgh16-D3Rat110)/IzmTkyo; nbrp rat no. 0496; 3pW1; SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: National BioResource Project for the Rat in Japan
Description: The desired fragment is transferred from WKY to SHRSP
Coat Color: Albino
Inbred Generations: F11
Last Known Status: Cryopreserved Sperm
Research Usage Diabetes Obesity; Cardio Hypertension
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,778,704 - 10,778,823RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.036,000,748 - 47,155,284RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0311,361,699 - 53,824,856RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.436,373,335 - 42,729,760RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Mgh16)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2310,778,704 - 10,778,823 (+)MAPPER
Rnor_6.036,000,748 - 6,000,866NCBI
Rnor_5.0311,361,699 - 11,361,817UniSTS
RGSC_v3.436,373,335 - 6,373,454RGD
RGSC_v3.436,373,336 - 6,373,454UniSTS
RGSC_v3.136,373,636 - 6,373,754RGD
Celera35,573,283 - 5,573,401UniSTS
RH 3.4 Map316.9UniSTS
RH 3.4 Map316.9RGD
Cytogenetic Map3p12UniSTS

Flank 2 / 1 (D3Rat110)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0347,155,167 - 47,155,284NCBI
Rnor_5.0353,824,739 - 53,824,856UniSTS
RGSC_v3.4342,729,639 - 42,729,760RGD
RGSC_v3.4342,729,640 - 42,729,760UniSTS
RGSC_v3.1342,625,818 - 42,626,218RGD
SHRSP x BN Map332.8199UniSTS
SHRSP x BN Map332.8199RGD

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-29 SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo    SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo    Name updated 68913 APPROVED
2012-05-29 SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo    SHRSP.WKY-(D3Mgh16-D3Rat110)/Tkyo    Name updated 68913 APPROVED