Strain Report - Rat Genome Database

Name: SHRSP.WKY- (D15Rat68-D15Rat106) /Tkyo
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo

Symbol:

SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo

Strain:

SHRSP.WKY-(D15Rat68-D15Rat106)

Substrain:

Tkyo

RGD ID:

2290279

Citation ID:

RRID:RGD_2290279

Ontology ID:

RS:0001436

Previously known as:

15pW2; NBRP Rat No: 0502; SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo; SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo; SHRSP.WKY-(D15Rat68-D15Rat106)/IzmTkyo; nbrp rat no. 0502; 15pW2; SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo

Type:

congenic

Source:

National BioResource Project for the Rat in Japan

Origin:

This congenic strain was established from WKY purchased from Japan SLC, Inc. and SHRSP at the Research Institute International Medical Center of Japan in 2001. The rats which have the heterozygous consomic segment were established in 2004, and were bred homozygous in 2005.

Coat Color:

Albino

Inbred Generations:

Last Known Status:

Cryopreserved Sperm

Research Usage

Diabetes Obesity; Cardio Hypertension

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	56,484,420 - 98,288,169	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	15	63,498,932 - 106,550,657	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	15	67,139,660 - 109,944,957	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	15	62,521,452 - 106,177,917	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Strains registered by the National Bio Resource Project for the Rat in Japan	Personal Communication with NBRP
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D15Rat68)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	56,484,420 - 56,484,560 (+)	MAPPER
Rnor_6.0	15	63,498,932 - 63,499,071	NCBI
Rnor_5.0	15	67,139,660 - 67,139,799	UniSTS
RGSC_v3.4	15	62,521,452 - 62,521,592	RGD
RGSC_v3.4	15	62,521,453 - 62,521,592	UniSTS
RGSC_v3.1	15	62,537,233 - 62,537,372	RGD
Celera	15	56,046,905 - 56,047,044	UniSTS
RH 3.4 Map	15	424.0	UniSTS
RH 3.4 Map	15	424.0	RGD
RH 2.0 Map	15	358.3	RGD
SHRSP x BN Map	15	39.1498	RGD
FHH x ACI Map	15	47.47	RGD

Flank 2 / 1 (D15Rat106)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	15	98,287,955 - 98,288,169 (+)	MAPPER
Rnor_6.0	15	106,550,444 - 106,550,657	NCBI
Rnor_5.0	15	109,944,744 - 109,944,957	UniSTS
RGSC_v3.4	15	106,177,703 - 106,177,917	RGD
RGSC_v3.4	15	106,177,704 - 106,177,917	UniSTS
RGSC_v3.1	15	106,193,484 - 106,193,697	RGD
Celera	15	97,072,390 - 97,072,603	UniSTS
RH 3.4 Map	15	688.5	RGD
RH 3.4 Map	15	688.5	UniSTS
SHRSP x BN Map	15	65.3898	UniSTS
SHRSP x BN Map	15	65.3898	RGD
FHH x ACI Map	15	74.04	RGD
Cytogenetic Map	15	q24-q25	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_reproduction	Maintained in homozygous condition. Sib mating.	1302502

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-05-29	SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo		SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo		Name updated	68913	APPROVED
2012-05-29	SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo		SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo		Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SHRSP.WKY-(D15Rat68-D15Rat106)/Tkyo