Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SD-Brca2m1Uwm

Symbol: SD-Brca2m1Uwm
Strain: SD-Brca2m1
Substrain: Uwm
RGD ID: 1641865
Citation ID: RRID:RRRC_00286
Ontology ID: RS:0001384
Alleles: Brca2m1Uwm
Also known as: SD-Brca2m1Uwm; SD-Brca2m1Uwm; RRRC:00286
Type: mutant
Source: University of Wisconsin-Madison, Madison, Wisconsin, Rat Resource and Research Center
Origin: 9 week-old male rats were injected with ENU (N-ethyl-N-nitrosourea) and then bred. Phenotypically variant pups were visually identified and screened. Nonsense transversion mutation at nucleotide T4254 that converted TAT (tyrosine) to TAA (stop codon).
Last Known Status: Cryopreserved Embryo; Cryopreserved Sperm (as of 2016-12-01)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21259,492 - 103,789RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.012503,660 - 544,754RGD_MAPPER_PIPELINERnor6.0
Rnor_5.012490,733 - 535,090RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4124,282,952 - 4,323,693RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

References


Region

Rat Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type
Brca2m1Uwm-var1 chr12 518257 518257 T A point_mutation

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-05-28 SD-Brca2m1Uwm    SD-Brca2m1Uwm    gene nomenclature is perpetuated to the strain symbol 2293819 APPROVED
2014-04-28 SD-Brca2m1Uwm    SD-Brca2m1Uwm    gene nomenclature is perpetuated to the strain symbol 2293819 APPROVED
2014-03-28 SD-Brca2m1Uwm    SD-Brca2m1Uwm    gene nomenclature is perpetuated to the strain symbol 2293819 APPROVED
2014-03-21 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Name updated 68913 APPROVED
2014-03-21 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Name updated 68913 APPROVED
2014-03-21 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Symbol updated 68687 APPROVED
2014-03-21 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Symbol updated 68687 APPROVED
2012-04-18 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Name updated 68913 APPROVED
2012-04-18 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Name updated 68913 APPROVED
2011-12-02 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Name updated 68913 APPROVED
2011-12-02 SD-Brca2m1Uwm    SD-Brca2m1Uwm    Name updated 68913 APPROVED