Strain Report - Rat Genome Database

Name: BN- Slc27a5 m2Mcwi
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: BN-Slc27a5^m2Mcwi

Symbol:

BN-Slc27a5^m2Mcwi

Strain:

BN-Slc27a5^m2

Substrain:

Mcwi

RGD ID:

1626214

Citation ID:

RRID:RGD_1626214

Ontology ID:

RS:0001196

Alleles:

Slc27a5^m2Mcwi

Previously known as:

BN-Slc27a5m2Mcwi

Type:

mutant

Source:

PGA

Origin:

Male founders are injected with ENU (N-ethyl-N-nitrosourea) and harem bred to females. The pups are genetically screened using the TILLING assay (an enzyme-based heteroduplex cleavage assay) as well as nucleotide sequencing to identify and characterize target genes possessing ENU-induced mutations. K160E mutation is generated from the codon change AAA/GAA.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	73,616,556 - 73,627,149	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	1	65,576,599 - 65,587,192	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	1	66,387,832 - 66,398,425	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	1	72,924,630 - 72,935,223	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	PhysGen Strains	PhysGen strains
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Additional Information

Nomenclature History

Date	Current Symbol	Previous Symbol	Description	Reference	Status
2014-03-21	BN-Slc27a5^m2Mcwi	BN-Slc27a5^m2Mcwi	Symbol updated	68687	APPROVED
2014-03-21	BN-Slc27a5^m2Mcwi	BN-Slc27a5^m2Mcwi	Name updated	68913	APPROVED
2014-03-21	BN-Slc27a5^m2Mcwi	BN-Slc27a5^m2Mcwi	Symbol updated	68687	APPROVED
2014-03-21	BN-Slc27a5^m2Mcwi	BN-Slc27a5^m2Mcwi	Name updated	68913	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: BN-Slc27a5m2Mcwi

Strain: BN-Slc27a5^m2Mcwi