Strain Report - Rat Genome Database

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Strain: COP.DA-(D3Rat233-D3Mgh14)/Mco

Symbol: COP.DA-(D3Rat233-D3Mgh14)/Mco
Strain: COP.DA-(D3Rat233-D3Mgh14)
Substrain: Mco
RGD ID: 1599769
Citation ID: RRID:RGD_1599769
Ontology ID: RS:0001216
Previously known as: COP.DA(chr 3); COP.DA-(D3Rat233-D3Mgh14)/Mco
Type: congenic
Source: University of Toledo College of Medicine, Toledo, Ohio
Origin: Male COP/OlaHsd were crossed with female DA/OlaHsd then the F1 males were backcrossed to COP females. Male progeny containing the fewest number of DA-alleles were backcrossed to female COP. These males were backcrossed to female COP.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23118,376,416 - 118,376,539RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03123,700,322 - 123,700,444RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03130,198,712 - 130,198,834RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.43118,863,100 - 118,863,223RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Congenic Strains Confirm Aerobic Running Capacity Quantitative Trait Loci on Rat Chromosome 16 and Identify Possible Intermediate Phenotypes. Ways JA, etal., Physiol Genomics. 2006 Dec 19;.

Region

Position Markers

Flank 1 / 1 (D3Rat233)
Rat AssemblyChrPosition (strand)Source
SHRSP x BN Map32.4699UniSTS
SHRSP x BN Map32.4699RGD

Flank 2 / 1 (D3Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23118,376,416 - 118,376,539 (+)MAPPER
Rnor_6.03123,700,322 - 123,700,444NCBI
Rnor_5.03130,198,712 - 130,198,834UniSTS
RGSC_v3.43118,863,100 - 118,863,223RGD
RGSC_v3.43118,863,101 - 118,863,223UniSTS
RGSC_v3.13118,768,673 - 118,768,796RGD
Celera3117,184,579 - 117,184,701UniSTS
RH 3.4 Map31013.1UniSTS
RH 3.4 Map31013.1RGD
RH 2.0 Map3692.7RGD
SHRSP x BN Map357.3499RGD
Cytogenetic Map3q36UniSTS
Strain QTL Data
Symbol Name Trait
Arunc5 Aerobic running capacity QTL 5 exercise endurance trait   (VT:0002332)    

Additional Information