Strain Report - Rat Genome Database

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Strain: COP.DA-(D16Rat12-D16Rat90)/Mco

Symbol: COP.DA-(D16Rat12-D16Rat90)/Mco
Strain: COP.DA-(D16Rat12-D16Rat90)
Substrain: Mco
RGD ID: 1599764
Citation ID: RRID:RGD_1599764
Ontology ID: RS:0001215
Previously known as: COP.DA(chr 16); COP.DA-(D16Rat12-D16Rat90)/Mco
Type: congenic
Source: University of Toledo College of Medicine, Toledo, Ohio
Origin: Male COP/OlaHsd were crossed with female DA/OlaHsd then the F1 males were backcrossed to COP females. Male progeny containing the fewest number of DA-alleles were backcrossed to female COP. These males were backcrossed to female COP.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.216380,245 - 80,345,693RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0161,090,054 - 86,162,972RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0161,084,304 - 85,597,057RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.416350,121 - 85,734,479RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Congenic Strains Confirm Aerobic Running Capacity Quantitative Trait Loci on Rat Chromosome 16 and Identify Possible Intermediate Phenotypes. Ways JA, etal., Physiol Genomics. 2006 Dec 19;.

Region

Position Markers

Flank 1 / 1 (D16Rat12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.216380,245 - 380,356 (+)MAPPER
Rnor_6.0161,090,054 - 1,090,164NCBI
Rnor_5.0161,084,304 - 1,084,414UniSTS
RGSC_v3.416350,121 - 350,232RGD
RGSC_v3.416350,122 - 350,232UniSTS
RGSC_v3.116350,122 - 350,232RGD
RH 3.4 Map1616.3UniSTS
RH 3.4 Map1616.3RGD
RH 2.0 Map160.0RGD
SHRSP x BN Map160.04RGD
FHH x ACI Map161.9899RGD

Flank 2 / 1 (D16Rat90)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21680,345,485 - 80,345,693 (+)MAPPER
Rnor_6.01686,162,765 - 86,162,972NCBI
Rnor_5.01685,596,850 - 85,597,057UniSTS
RGSC_v3.41685,734,272 - 85,734,479UniSTS
RGSC_v3.41685,734,271 - 85,734,479RGD
RGSC_v3.11685,720,312 - 85,720,519RGD
Celera1678,128,489 - 78,128,696UniSTS
RH 3.4 Map16775.0RGD
RH 3.4 Map16775.0UniSTS
RH 2.0 Map16882.4RGD
FHH x ACI Map1649.5899RGD
Strain QTL Data
Symbol Name Trait
Arunc4 Aerobic running capacity QTL 4 exercise endurance trait   (VT:0002332)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics This strain encompasses 95-100% of chr 16 so could be considered a consomic strain. 1598978