Strain Report - Rat Genome Database

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Strain: F344.BN-(D16Mit5-D16Rat75)

Symbol: F344.BN-(D16Mit5-D16Rat75)
Strain: F344.BN-(D16Mit5-D16Rat75)
RGD ID: 1599755
Citation ID: RRID:RGD_1599755
Ontology ID: RS:0001296
Previously known as: F344.BN-(D16Mit5-D16Rat75); F344.BN-Hcs4; F344.BN-Hcs4
Type: congenic
Source: Department of Biomedical Sciences, Division of Experimental Pathology and Oncology, University of Sassari, Sassari, Italy
Origin: BN/Crli was crossed with F344/Crli, F1 animals were backcrossed with F344 females three times to get ~25 cM region which corresponds to Hcs4 segment
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21622,477,482 - 22,477,621RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01624,228,228 - 24,228,366RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01624,112,631 - 24,112,769RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41624,131,965 - 24,132,402RGD_MAPPER_PIPELINERGSC3.4

Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
F344.BN-(D16Mit5-D16Rat75)  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
liver integrity trait  EXP 1599590 RGD 


References - curated
# Reference Title Reference Citation
1. Mapping a sex hormone-sensitive gene determining female resistance to liver carcinogenesis in a congenic F344.BN-Hcs4 rat. De Miglio MR, etal., Cancer Res. 2006 Nov 1;66(21):10384-90.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D16Mit5)
Rat AssemblyChrPosition (strand)Source
Celera1616,482,496 - 16,482,677UniSTS
RH 3.4 Map16158.2UniSTS
RH 3.4 Map16158.2RGD
RH 2.0 Map16118.6RGD
SHRSP x BN Map165.71RGD
Cytogenetic Map16p14UniSTS

Flank 2 / 1 (D16Rat75)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21622,477,482 - 22,477,621 (+)MAPPER
Rnor_6.01624,228,228 - 24,228,366NCBI
Rnor_5.01624,112,631 - 24,112,769UniSTS
RGSC_v3.41624,132,088 - 24,132,226UniSTS
RGSC_v3.41624,131,965 - 24,132,402RGD
RGSC_v3.11624,132,086 - 24,132,224RGD
Celera1622,611,810 - 22,611,948UniSTS
RH 3.4 Map16266.0RGD
RH 3.4 Map16266.0UniSTS
RH 2.0 Map16308.2RGD
SHRSP x BN Map1610.12RGD
Strain QTL Data
Symbol Name Trait
Hcas8 Hepatocarcinoma susceptibility QTL 8 liver integrity trait   (VT:0010547)    

Additional Information