Strain Report - Rat Genome Database

Name: SS.SR-( D3Mco78-D3Got130 )/Jr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.SR-(D3Mco78-D3Got130)/Jr

Symbol:

SS.SR-(D3Mco78-D3Got130)/Jr

Strain:

SS.SR-(D3Mco78-D3Got130)

Substrain:

RGD ID:

1582194

Citation ID:

RRID:RGD_1582194

Ontology ID:

RS:0001568

Previously known as:

S.R(ET3x5); SS.SR-(D3Mco78-D3Got130)/Jr; S.R-(D3Mco78-D3Got130)/Jr

Type:

congenic

Source:

Medical College of Ohio, Toledo, Ohio, USA

Origin:

SS.SR-(D3Mco19-D3Mco5)/Jr rats were crossed with SS to yield F1, these heterozygous rats were intercrossed to obtain F2 which were screened to identify the SR-rat derived region, these were then crossed with SS to duplicate the recombinant chromosome

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	147,739,514 - 161,994,638	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	3	155,586,270 - 171,277,347	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	3	160,026,579 - 177,341,735	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	3	149,822,571 - 164,079,729	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "SS.SR-(D3Mco78-D3Got130)/Jr" (RS:0001568)

Rat Strains:

SS.SR-(D3Mco78-D3Got130)/Jr

Clinical Measurements:

Experimental Conditions:

controlled sodium content diet

Measurement Methods:

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

View chart

Download data table

View expanded data table

Clinical Measurement

systolic blood pressure

body weight

heart wet weight

References

References - curated

#	Reference Title	Reference Citation
1.	Substitution Mapping in Dahl Rats Identifies Two Distinct Blood Pressure Quantitative Trait Loci within 1.12 Mb and 1.25 Mb Intervals on Chromosome 3.	Lee SJ, etal., Genetics. 2006 Oct 8;.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Mco78)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	161,994,411 - 161,994,638 (+)	MAPPER
Rnor_6.0	3	171,277,123 - 171,277,347	NCBI
Rnor_5.0	3	177,341,511 - 177,341,735	UniSTS
RGSC_v3.4	3	164,079,505 - 164,079,729	UniSTS
Celera	3	161,181,873 - 161,182,097	UniSTS
Cytogenetic Map	3	q42	UniSTS

Flank 2 / 1 (D3Got130)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	147,739,514 - 147,739,722 (+)	MAPPER
Rnor_6.0	3	155,586,270 - 155,586,477	NCBI
Rnor_5.0	3	160,026,579 - 160,026,786	UniSTS
RGSC_v3.4	3	149,822,571 - 149,822,779	RGD
RGSC_v3.4	3	149,822,572 - 149,822,779	UniSTS
RGSC_v3.4	3	149,822,572 - 149,823,173	UniSTS
RGSC_v3.1	3	149,728,481 - 149,728,688	RGD
Celera	3	146,432,847 - 146,433,054	UniSTS
RH 3.4 Map	3	1362.79	RGD
RH 3.4 Map	3	1362.79	UniSTS

Additional Information

RGD Curation Notes

Note Type	Note	Reference
strain_characteristics	These carry the SS-rat allele	1581650

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.SR-(D3Mco78-D3Got130)/Jr

Related Phenotype Data for Term "SS.SR-(D3Mco78-D3Got130)/Jr" (RS:0001568)