Strain Report - Rat Genome Database

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Strain: SS.SR-(D3Mco78-D3Got130)/Jr

Symbol: SS.SR-(D3Mco78-D3Got130)/Jr
Strain: SS.SR-(D3Mco78-D3Got130)
Substrain: Jr
RGD ID: 1582194
Citation ID: RRID:RGD_1582194
Ontology ID: RS:0001568
Previously known as: S.R(ET3x5); SS.SR-(D3Mco78-D3Got130)/Jr; S.R-(D3Mco78-D3Got130)/Jr
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio, USA
Origin: SS.SR-(D3Mco19-D3Mco5)/Jr rats were crossed with SS to yield F1, these heterozygous rats were intercrossed to obtain F2 which were screened to identify the SR-rat derived region, these were then crossed with SS to duplicate the recombinant chromosome
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23147,739,514 - 161,994,638RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03155,586,270 - 171,277,347RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03160,026,579 - 177,341,735RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.43149,822,571 - 164,079,729RGD_MAPPER_PIPELINERGSC3.4

Phenotype Values via Phenominer Click to see Annotation Detail View

Related Phenotype Data for Term "SS.SR-(D3Mco78-D3Got130)/Jr" (RS:0001568)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table


References - curated
# Reference Title Reference Citation
1. Substitution Mapping in Dahl Rats Identifies Two Distinct Blood Pressure Quantitative Trait Loci within 1.12 Mb and 1.25 Mb Intervals on Chromosome 3. Lee SJ, etal., Genetics. 2006 Oct 8;.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D3Mco78)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23161,994,411 - 161,994,638 (+)MAPPER
Rnor_6.03171,277,123 - 171,277,347NCBI
Rnor_5.03177,341,511 - 177,341,735UniSTS
RGSC_v3.43164,079,505 - 164,079,729UniSTS
Celera3161,181,873 - 161,182,097UniSTS
Cytogenetic Map3q42UniSTS

Flank 2 / 1 (D3Got130)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23147,739,514 - 147,739,722 (+)MAPPER
Rnor_6.03155,586,270 - 155,586,477NCBI
Rnor_5.03160,026,579 - 160,026,786UniSTS
RGSC_v3.43149,822,571 - 149,822,779RGD
RGSC_v3.43149,822,572 - 149,822,779UniSTS
RGSC_v3.43149,822,572 - 149,823,173UniSTS
RGSC_v3.13149,728,481 - 149,728,688RGD
Celera3146,432,847 - 146,433,054UniSTS
RH 3.4 Map31362.79RGD
RH 3.4 Map31362.79UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics These carry the SS-rat allele 1581650