Strain Report - Rat Genome Database

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Strain: SS.SR-(D3Mco36-D3Got159)/Jr

Symbol: SS.SR-(D3Mco36-D3Got159)/Jr
Strain: SS.SR-(D3Mco36-D3Got159)
Substrain: Jr
RGD ID: 1582192
Citation ID: RRID:RGD_1582192
Ontology ID: RS:0001564
Previously known as: S.R(ET3x3); SS.SR-(D3Mco36-D3Got159)/Jr; S.R-(D3Mco36-D3Got159)/Jr; SS.SR-(D3Mco36-D3Got159)/Jr
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio, USA
Origin: SS.SR-(D3Mco19-D3Mco5)/Jr rats were crossed with SS to yield F1, these heterozygous rats were intercrossed to obtain F2 which were screened to identify the SR-rat derived region, these were then crossed with SS to duplicate the recombinant chromosome
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23168,974,481 - 168,974,694RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.03177,366,448 - 177,366,660RGD_MAPPER_PIPELINERnor6.0
Rnor_5.03181,074,759 - 181,074,971RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.43162,807,724 - 171,009,778RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
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References

References - curated
# Reference Title Reference Citation
1. Substitution Mapping in Dahl Rats Identifies Two Distinct Blood Pressure Quantitative Trait Loci within 1.12 Mb and 1.25 Mb Intervals on Chromosome 3. Lee SJ, etal., Genetics. 2006 Oct 8;.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D3Mco36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.23168,974,481 - 168,974,694 (+)MAPPER
Rnor_6.03177,366,448 - 177,366,660NCBI
Rnor_5.03181,074,759 - 181,074,971UniSTS
RGSC_v3.43171,009,566 - 171,009,778UniSTS
Celera3163,615,971 - 163,616,183UniSTS
Cytogenetic Map3q43UniSTS

Flank 2 / 1 (D3Got159)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.43162,807,724 - 162,807,910RGD
RGSC_v3.43162,807,725 - 162,807,910UniSTS
RGSC_v3.13162,713,761 - 162,713,946RGD
Celera3159,900,152 - 159,900,337UniSTS
RH 3.4 Map31490.6UniSTS
RH 3.4 Map31490.6RGD
RH 2.0 Map31012.8RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics These carry the SR-rat allele 1581650