Strain Report - Rat Genome Database

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Strain Registration

Strain: SS.SR-(D9Rat89-D9Mco27)/Mco

Symbol: SS.SR-(D9Rat89-D9Mco27)/Mco
Strain: SS.SR-(D9Rat89-D9Mco27)
Substrain: Mco
RGD ID: 1579905
Citation ID: RRID:RGD_1579905
Ontology ID: RS:0001573
Also Known As: S.R(9)x3A; SS.SR-(D9Rat89-D9Mco27)/Mco
Type: congenic
Available Source: Not Available
Origination: Department of Physiology and Cardiovascular Genomics, Medical College of Ohio, Toledo, Ohio
Description: Congenic strain derived from parental strains SS and SR.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2974,701,668 - 74,701,891RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.21072,976,092 - 72,976,291RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0980,400,409 - 80,400,631RGD_MAPPER_PIPELINERnor6.0
Rnor_6.01075,505,821 - 75,506,019RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0980,172,493 - 80,172,715RGD_MAPPER_PIPELINERnor5.0
Rnor_5.01074,600,366 - 74,600,564RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4972,257,996 - 72,258,219RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.41076,477,677 - 76,477,875RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Locating a Blood Pressure Quantitative Trait Locus Within 117 kb on the Rat Genome. Substitution Mapping and Renal Expression Analysis. Garrett MR, etal., Hypertension 2005 Jan 17;.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D9Rat89)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2974,701,668 - 74,701,891 (+)MAPPER
Rnor_6.0980,400,409 - 80,400,631NCBI
Rnor_5.0980,172,493 - 80,172,715UniSTS
RGSC_v3.4972,257,996 - 72,258,219RGD
RGSC_v3.4972,257,997 - 72,258,219UniSTS
RGSC_v3.1972,404,978 - 72,405,201RGD
Celera972,293,728 - 72,293,950UniSTS
FHH x ACI Map949.02UniSTS
FHH x ACI Map949.02RGD

Flank 2 / 1 (D10Chm222)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21072,976,092 - 72,976,291 (+)MAPPER
Rnor_6.01075,505,821 - 75,506,019NCBI
Rnor_5.01074,600,366 - 74,600,564UniSTS
RGSC_v3.41076,477,677 - 76,477,875UniSTS
Celera1071,885,458 - 71,885,656UniSTS
Cytogenetic Map10q26UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem Strain showed significantly lower systolic blood pressure than parental SS strain. 1334447