Strain Report - Rat Genome Database

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Strain: SS.LEW-(D5Rat130-D5Rat108)/JrMcwi

Symbol: SS.LEW-(D5Rat130-D5Rat108)/JrMcwi
Strain: SS.LEW-(D5Rat130-D5Rat108)
Substrain: JrMcwi
Full Name: SS.LEW-(D5Rat130-D5Rat108)/JrMcwi
RGD ID: 1579902
Citation ID: RRID:RGD_1579902
Ontology ID: RS:0001536
Also known as: SS.LEW-(D5Rat130-D5Rat108)/JrMcwi
Type: congenic
Source: Department of Physiology, Medical College of Wisconsin, Milwaukee
Origin: This congenic strain contains a LEW chromosome 5 segment transferred to the Dahl salt sensitive background. The strain was originally developed by Drs. Rapp and M. R. Garrett at the Medical University of Ohio and has also been maintained by brother-sister mating at the Medical College of Wisconsin for more than 20 generations.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2531,663,789 - 128,034,027RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0531,926,122 - 133,313,852RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0536,590,997 - 137,108,002RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4532,701,659 - 134,872,385RGD_MAPPER_PIPELINERGSC3.4

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mean arterial blood pressure


References - curated
1. RGD Automated Pipelines
2. Roman RJ, etal., Am J Physiol Renal Physiol. 2006 Jan 5;.


Position Markers

Flank 1 / 1 (D5Rat130)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2531,663,789 - 31,663,928 (+)MAPPER
Rnor_6.0531,926,122 - 31,926,260NCBI
Rnor_5.0536,590,997 - 36,591,135UniSTS
RGSC_v3.4532,701,967 - 32,702,105UniSTS
RGSC_v3.4532,701,659 - 32,702,109RGD
RGSC_v3.1532,702,146 - 32,702,284RGD
Celera530,814,646 - 30,814,784UniSTS
RH 3.4 Map5165.04UniSTS
RH 3.4 Map5165.04RGD
RH 2.0 Map5189.1RGD
SHRSP x BN Map519.3299RGD

Flank 2 / 1 (D5Rat108)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPER
Rnor_6.05133,313,668 - 133,313,852NCBI
Rnor_5.05137,107,818 - 137,108,002UniSTS
RGSC_v3.45134,871,897 - 134,872,385RGD
RGSC_v3.45134,871,902 - 134,872,086UniSTS
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS
Strain QTL Data
Symbol Name Trait
Rf54 Renal function QTL 54 kidney physiology trait   (VT:0002136)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other transferred chromosome 5 segment contains a region from RNO5 from markers D5Rat130 to D5Rat108 that excludes the CYP4A genes and is 5 Mbp shorter than the transferred chromosome 5 segment in congenic strain SS.LEW-(D5Rat130-D5Rat31)/JrMcwi 1578407