Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: SS.LEW-(D2Rat18-D2Chm277)/Ayd

Symbol: SS.LEW-(D2Rat18-D2Chm277)/Ayd
Strain: SS.LEW-(D2Rat18-D2Chm277)
Substrain: Ayd
RGD ID: 1579896
Citation ID: RRID:RGD_1579896
Ontology ID: RS:0001535
Also Known As: C2S.L2;SS.LEW-(D2Rat18-D2Chm277)/Ayd; SS.LEW-(D2Rat18-D2Chm277)/Ayd
Type: congenic
Available Source: Not Available
Origination: Research Centre Hospitalier de l'Universite de Montreal, Quebec, Canada
Description: Congenic strain was created from a SS/Jr parental strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2241,125,789 - 56,532,139RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0241,063,439 - 56,736,627RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0260,126,669 - 76,472,773RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4240,912,197 - 56,722,286RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D2Rat18-D2Chm277)/AydRatSS.LEW-(D2Rat18-D2Chm277)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D2Rat18-D2Chm277)/AydRatarterial blood pressure trait  EXP 1599557 RGD 
SS.LEW-(D2Rat18-D2Chm277)/AydRatarterial blood pressure trait  EXP 1358142 RGD 

References

References - curated
# Reference Title Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.
2. Severe hypertension caused by alleles from normotensive Lewis for a quantitative trait locus on Chromosome 2. Eliopoulos V, etal., Physiol Genomics 2005 Apr 12;.
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat18)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2241,125,789 - 41,125,954 (+)MAPPER
Rnor_6.0241,063,439 - 41,063,603NCBI
Rnor_5.0260,126,669 - 60,126,833UniSTS
RGSC_v3.4240,912,197 - 40,912,362RGD
RGSC_v3.4240,912,198 - 40,912,362UniSTS
RGSC_v3.1240,832,566 - 40,832,731RGD
Celera236,959,987 - 36,960,151UniSTS
RH 3.4 Map2178.9RGD
RH 3.4 Map2178.9UniSTS
RH 2.0 Map251.8RGD
SHRSP x BN Map218.4498RGD
Cytogenetic Map2q16UniSTS

Flank 2 / 1 (D2Chm277)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2256,531,912 - 56,532,139 (+)MAPPER
Rnor_6.0256,736,401 - 56,736,627NCBI
Rnor_5.0276,472,547 - 76,472,773UniSTS
RGSC_v3.4256,722,060 - 56,722,286UniSTS
Celera252,150,912 - 52,151,140UniSTS
Cytogenetic Map2 RGD
Strain QTL Data
Symbol Name Trait
Bp270 Blood pressure QTL 270 arterial blood pressure trait   (VT:2000000)    
Bp402 Blood pressure QTL 402 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem SAP, DAP, and MAP was NOT significantly different than Dahl SS parental strain. 1358142