Strain Report - Rat Genome Database

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Strain: SS.SHR-(D9Wox16-D9Rat64)/Mco

Symbol: SS.SHR-(D9Wox16-D9Rat64)/Mco
Strain: SS.SHR-(D9Wox16-D9Rat64)
Substrain: Mco
RGD ID: 1579702
Citation ID: RRID:RGD_1579702
Ontology ID: RS:0001561
Previously known as: S.SHR(9); SS.SHR-(D9Rat97-D9Rat70)/Mco;SS.SHR-(D9Wox16-D9Rat64)/Mco;SS.SHR-(D9Rat97-D9Rat70)/Mco; SS.SHR-(D9Wox16-D9Rat64)/Mco
Type: congenic
Source: Medical College of Ohio, Toledo, Ohio
Origin: Congenic strain from the parental SS/Jr and SHR/NHsd inbred strains.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2925,268,044 - 91,090,963RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0929,075,079 - 97,647,719RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0927,914,255 - 97,338,238RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4921,667,066 - 21,667,256RGD_MAPPER_PIPELINERGSC3.4

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype


References - curated
# Reference Title Reference Citation
1. Genetic linkage of urinary albumin excretion in Dahl salt-sensitive rats: influence of dietary salt and confirmation using congenic strains. Garrett MR, etal., Physiol Genomics. 2006 Mar 13;25(1):39-49.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Blood pressure and proteinuria effects of multiple quantitative trait loci on rat chromosome 9 that differentiate the spontaneously hypertensive rat from the Dahl salt-sensitive rat. Toland EJ, etal., J Hypertens. 2008 Nov;26(11):2134-41.


Position Markers

Flank 1 / 1 (D9Rat97)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,090,758 - 91,090,963 (+)MAPPER
Rnor_6.0997,647,515 - 97,647,719NCBI
Rnor_5.0997,338,034 - 97,338,238UniSTS
Celera988,638,830 - 88,639,034UniSTS
FHH x ACI Map962.18RGD
FHH x ACI Map962.18UniSTS

Flank 2 / 1 (D9Rat70)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2925,268,044 - 25,268,236 (+)MAPPER
Rnor_6.0929,075,079 - 29,075,268NCBI
Rnor_5.0927,914,255 - 27,914,444UniSTS
RGSC_v3.4921,667,066 - 21,667,255RGD
RGSC_v3.4921,667,067 - 21,667,256UniSTS
RGSC_v3.1921,668,480 - 21,668,669RGD
Celera922,834,240 - 22,834,435UniSTS
RH 3.4 Map9233.3UniSTS
RH 3.4 Map9233.3RGD
RH 2.0 Map9199.9RGD
SHRSP x BN Map923.2398RGD
Cytogenetic Map9 RGD
Strain QTL Data
Symbol Name Trait
Uae34 Urinary albumin excretion QTL 34 urine albumin amount   (VT:0002871)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem Congenic strain showed a greater fold reduction in urine albumin excretion level than urine protein excretion level compared to the SS parental strain. 1578520