Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Strain Registration

Strain: BN.LEW-(D10Mco17-D10Mco14)/Ciml

Symbol: BN.LEW-(D10Mco17-D10Mco14)/Ciml
Strain: BN.LEW-(D10Mco17-D10Mco14)
Substrain: Ciml
RGD ID: 1578712
Citation ID: RRID:RGD_1578712
Ontology ID: RS:0001202
Also Known As: BN.LEWc10-F; BN.LEW-(D10Rat32-D10Rat221)/Ciml; BN.LEW-(D10Mco17-D10Mco14)/Ciml; BN.LEW-(D10Rat32-D10Rat221)/Ciml
Type: congenic
Available Source: Not Available
Origination: Institut National de la Sante et de la Recherche Medicale, Toulouse, France
Description: Congenic strain created from parental LEW/Rj and BN/Rj strains.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21043,593,509 - 43,593,911RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01045,157,430 - 45,157,831RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01044,914,976 - 44,915,377RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41045,105,978 - 45,106,380RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View
toxoplasmosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. The rat Toxo1 locus directs toxoplasmosis outcome and controls parasite proliferation and spreading by macrophage-dependent mechanisms. Cavailles P, etal., Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):744-9. Epub 2006 Jan 6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Mco17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21043,593,509 - 43,593,911 (+)MAPPER
Rnor_6.01045,157,430 - 45,157,831NCBI
Rnor_5.01044,914,976 - 44,915,377UniSTS
RGSC_v3.41045,105,978 - 45,106,380RGD
RGSC_v3.41045,105,979 - 45,106,380UniSTS
RGSC_v3.11045,119,601 - 45,120,003RGD
Celera1042,864,444 - 42,864,845UniSTS
Cytogenetic Map10q22UniSTS

Flank 2 / 1 (D10Mco14)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map10 RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_infection Congenic strain showed susceptibility to infection from Toxoplasma gondii. 1578521

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-07 BN.LEW-(D10Mco17-D10Mco14)/Ciml    BN.LEW-(D10Mco17-D10Mco14)/Ciml    Name updated 68913 APPROVED
2014-04-07 BN.LEW-(D10Mco17-D10Mco14)/Ciml    BN.LEW-(D10Mco17-D10Mco14)/Ciml    Name updated 68913 APPROVED