Strain Report - Rat Genome Database

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Strain: SS.LEW-(D2Rat199-D2Rat143)/Ayd

Symbol: SS.LEW-(D2Rat199-D2Rat143)/Ayd
Strain: SS.LEW-(D2Rat199-D2Rat143)
Substrain: Ayd
RGD ID: 1549795
Citation ID: RRID:RGD_1549795
Ontology ID: RS:0000877
Also Known As: C2S.L1; SS.LEW-(D2Rat199-D2Rat143)/Ayd
Type: congenic
Available Source: Not Available
Origination: Research Centre Hospitalier de l'Universite de Montreal, Quebec, Canada
Description: Congenic strain was created from a SS/Jr parental strain
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2241,243,963 - 103,519,040RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0241,179,255 - 106,156,987RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0260,242,455 - 125,885,146RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4241,032,071 - 106,236,206RGD_MAPPER_PIPELINERGSC3.4

Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
SS.LEW-(D2Rat199-D2Rat143)/Ayd  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
arterial blood pressure trait  EXP 1358142 RGD 


References - curated
# Reference Title Reference Citation
1. Severe hypertension caused by alleles from normotensive Lewis for a quantitative trait locus on Chromosome 2. Eliopoulos V, etal., Physiol Genomics 2005 Apr 12;.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines


Position Markers

Flank 1 / 1 (D2Rat199)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2241,243,963 - 41,244,106 (+)MAPPER
Rnor_6.0241,179,255 - 41,179,397NCBI
Rnor_5.0260,242,455 - 60,242,597UniSTS
RGSC_v3.4241,032,071 - 41,032,214RGD
RGSC_v3.4241,032,072 - 41,032,214UniSTS
RGSC_v3.1240,952,440 - 40,952,583RGD
Celera237,077,901 - 37,078,043UniSTS
SHRSP x BN Map218.4498RGD
SHRSP x BN Map218.4498UniSTS
Cytogenetic Map2q16UniSTS

Flank 2 / 1 (D2Rat143)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22103,518,774 - 103,519,040 (+)MAPPER
Rnor_6.02106,156,724 - 106,156,987NCBI
Rnor_5.02125,884,883 - 125,885,146UniSTS
RGSC_v3.42106,235,944 - 106,236,206RGD
RGSC_v3.42106,235,943 - 106,236,206UniSTS
RGSC_v3.12106,180,906 - 106,181,168RGD
Celera298,871,348 - 98,871,611UniSTS
RH 3.4 Map2737.6UniSTS
RH 3.4 Map2737.6RGD
SHRSP x BN Map237.6698UniSTS
SHRSP x BN Map237.6698RGD
Strain QTL Data
Symbol Name Trait
Bp270 Blood pressure QTL 270 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem Mean arterial pressure, diastolic arterial pressure and systolic arterial pressure are higher than parental Dahl salt sensitive parental strain 1358142