Strain Report - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: LH-Chr 17LN-C17h6orf52em2Mcwi

Symbol: LH-Chr 17LN-C17h6orf52em2Mcwi
Strain: LH-Chr 17LN-C17h6orf52em2
Substrain: Mcwi
RGD ID: 13800877
Citation ID: RRID:RGD_13800877
Ontology ID: RS:0004666
Alleles: C17h6orf52em2Mcwi
Type: mutant
Source: Not Available
Origin: CRISPR/Cas9 system was used to introduce a net 10-bp insertion in exon 2 of rat C17h6orf52.
Last Known Status: Cryopreserved Sperm (as of 2018-10-18)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21723,767,016 - 23,767,016RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01721,600,326 - 21,615,888RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01723,581,681 - 23,595,498RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41729,733,271 - 29,746,771RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. Melinda Dwinell’s group Personal communication between Dr. Melinda Dwinell’s group and the RGD curators

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
C17h6orf52em2Mcwi-var1 chr17 23767016 23767016 C TGGAAGAGGAA delins mRatBN7.2

Additional Information