Strain Report - Rat Genome Database

Name: T2DN- F2r em1Mcwi
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: T2DN-F2r^em1Mcwi

Symbol:

T2DN-F2r^em1Mcwi

Strain:

T2DN-F2r^em1

Substrain:

Mcwi

RGD ID:

13799350

Citation ID:

RRID:RGD_13799350

Ontology ID:

RS:0004651

Alleles:

F2r^em1Mcwi

Type:

mutant

Source:

MCW Gene Editing Rat Resource Center; Contact MCW rat distribution at mcwcustomrats@mcw.edu

Origin:

CRISPR/Cas9 system was used to introduce a 2-bp deletion in exon 1 of F2r gene in the T2DN/Mcwi embryos.

Last Known Status:

Cryopreserved Sperm (as of 2018-10-10)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	26,872,357 - 26,872,358	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	2	26,118,760 - 26,135,340	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	2	45,254,489 - 45,257,761	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	2	25,985,800 - 25,989,072	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

Region

Allelic Variants

Name	Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Assembly
F2rem1Mcwi-var1	chr2	26872357	26872358	AC	-	deletion	mRatBN7.2

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: T2DN-F2rem1Mcwi

Strain: T2DN-F2r^em1Mcwi