Strain Report - Rat Genome Database

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Strain: F344.HTX-(D11Rat4-D11Arb4)/Hcj

Symbol: F344.HTX-(D11Rat4-D11Arb4)/Hcj
Strain: F344.HTX-(D11Rat4-D11Arb4)
Substrain: Hcj
RGD ID: 1358991
Citation ID: RRID:RGD_1358991
Ontology ID: RS:0000304
Previously known as: F344.H-Tx C11; F344.HTX-(D11Rat4-D11Arb4)/Hcj
Type: congenic
Source: Department of Pharmacology, University of Florida, Gainesville
Origin: Congenic strain originated from F344/NHsd parental strain bred to HTX/Hcj
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,790,342 - 66,422,377RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01165,352,097 - 69,649,936RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01166,731,054 - 72,739,915RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41164,573,222 - 68,235,010RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Single and multiple congenic strains for hydrocephalus in the H-Tx rat. Jones HC, etal., Mamm Genome 2005 Apr;16(4):251-61.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D11Rat4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21162,790,342 - 62,790,509 (+)MAPPER
Rnor_6.01165,687,080 - 65,687,246NCBI
Rnor_6.01165,352,097 - 65,352,263NCBI
Rnor_5.01166,731,054 - 66,731,220UniSTS
RGSC_v3.41164,573,222 - 64,573,702RGD
RGSC_v3.41164,573,426 - 64,573,592UniSTS
RGSC_v3.11164,631,015 - 64,631,181RGD
Celera1162,288,965 - 62,289,117UniSTS
RH 3.4 Map11493.0UniSTS
RH 3.4 Map11493.0RGD
RH 2.0 Map11184.3RGD
SHRSP x BN Map1128.7798RGD
Cytogenetic Map11q21UniSTS

Flank 2 / 1 (D11Arb4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21166,422,141 - 66,422,377 (+)MAPPER
Rnor_6.01169,649,701 - 69,649,936NCBI
Rnor_5.01172,739,680 - 72,739,915UniSTS
RGSC_v3.41168,234,774 - 68,235,010RGD
RGSC_v3.41168,234,775 - 68,235,010UniSTS
RGSC_v3.11168,292,364 - 68,292,599RGD
Celera1165,874,133 - 65,874,348UniSTS
RH 3.4 Map11416.8UniSTS
RH 3.4 Map11416.8RGD
RH 2.0 Map11147.1RGD
SHRSP x BN Map1129.8399RGD
Cytogenetic Map11q22UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_life_disease No rats showed severe hydrocephalus but some showed a mild form of the disease. 1358769