Strain Report - Rat Genome Database
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Strain: DA.F344-(D10Mit9-D10Rat24)/Nsi

Symbol: DA.F344-(D10Mit9-D10Rat24)/Nsi
Strain: DA.F344-(D10Mit9-D10Rat24)
Substrain: Nsi
RGD ID: 1358990
RRID: RGD_1358990
Ontology ID: RS:0000219
Also known as: Cia5d; DA.F344-(D10Rat37-D10Arb9)/Nsi; DA.F344(Cia5d); DA.F344-(D10Mit9-D10Rat24)/Nsi
Type: congenic
Source: North Shore-Long Island Jewish Research Institute,350 Community Drive - Manhasset, NY 11030
Origin: Congenic strain created by backcrossing DA/BklArbNsi and F344/Hsd
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01031,919,397 - 78,343,192RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01031,740,635 - 78,195,122RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41031,931,622 - 79,229,233RGD_MAPPER_PIPELINERGSC3.4






References


Region

Position Markers

Flank 1 / 1 (D10Mit9)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01031,919,397 - 31,919,634NCBI
Rnor_5.01031,740,635 - 31,740,872UniSTS
RGSC_v3.41031,931,622 - 31,931,860RGD
RGSC_v3.41031,931,623 - 31,931,860UniSTS
RGSC_v3.11031,932,672 - 31,932,909RGD
Celera1030,668,756 - 30,668,993UniSTS
Cytogenetic Map10 RGD
RH 3.4 Map10340.71UniSTS
RH 3.4 Map10340.71RGD
RH 2.0 Map10373.7RGD

Flank 2 / 1 (D10Rat24)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01078,343,027 - 78,343,192NCBI
Rnor_5.01078,194,957 - 78,195,122UniSTS
RGSC_v3.41079,229,068 - 79,229,233UniSTS
RGSC_v3.41079,229,067 - 79,229,233RGD
RGSC_v3.11079,243,438 - 79,243,603RGD
Celera1074,527,028 - 74,527,193UniSTS
Cytogenetic Map10q26UniSTS
RH 3.4 Map10684.69RGD
RH 3.4 Map10684.69UniSTS
RH 2.0 Map10804.1RGD
SHRSP x BN Map1052.2699RGD
Strain QTL Data
Symbol Name Trait
Pia26 Pristane induced arthritis QTL 26 joint integrity trait   (VT:0010548)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_other Reduced number of FLS invaded through the collagen barrier and produced lower levels of active MMP-2 2302383
strain_other Three clusters of genes were expressed in increased levels in DA and down-regulated in this congenic, 12 out of 36 genes are involved in cancer regulation processes. 2300006
strain_other 17 genes are expressed in increased levels in this strain and down regulated in DA. 2300006
strain_other Fibroblast-like synoviocytes (FLS) were isolated from the synovial tissue from the ankles and analysed; 66 genes were differently expressed in DA and this congenic. 2300006
strain_other Trpv2 expression was 1.9 fold higher in fibroblast-like synoviocytes (FLS) which were isolated from the synovial tissue of DA as compared to the ones isolated from these rats 9999444

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-06 DA.F344-(D10Mit9-D10Rat24)/Nsi    DA.F344-(D10Rat37-D10Arb9)/Nsi    Symbol updated 68687 APPROVED
2013-09-06 DA.F344-(D10Mit9-D10Rat24)/Nsi    DA.F344-(D10Rat37-D10Arb9)/Nsi    Name updated 68913 APPROVED
2013-09-06 DA.F344-(D10Mit9-D10Rat24)/Nsi    DA.F344-(D10Rat37-D10Arb9)/Nsi    Symbol updated 68687 APPROVED
2013-09-06 DA.F344-(D10Mit9-D10Rat24)/Nsi    DA.F344-(D10Rat37-D10Arb9)/Nsi    Name updated 68913 APPROVED