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Strain Registration

Strain: BB.SHR-(D4Got41-Gimap5)/K

Symbol: BB.SHR-(D4Got41-Gimap5)/K
Strain: BB.SHR-(D4Got41-Gimap5)
Substrain: K
RGD ID: 1357974
Citation ID: RRID:RGD_1357974
Ontology ID: RS:0000062
Also Known As: BB.4Sb; BB.SHR-(D4Got41-Gimap5)/K
Type: congenic
Available Source: Not Available
Origination: Dept. of Laboratory Animal Science, University of Greifswald, Karlsburg, Germany
Description: Originated from BB.SHR-(D4Got41-Tacr1) rats crossed with BB/OK rats to create a congenic substrain.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2461,697,658 - 77,701,025RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0460,439,127 - 78,386,683RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0460,179,409 - 143,073,003RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4460,262,965 - 76,843,214RGD_MAPPER_PIPELINERGSC3.4





References

References - curated
# Reference Title Reference Citation
1. Phenotypic and genetic analyses of subcongenic BB.SHR rat lines shorten the region on chromosome 4 bearing gene(s) for underlying facets of metabolic syndrome. Kloting N, etal., Physiol Genomics 2004 Aug 11;18(3):325-30.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Got41)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2461,697,658 - 61,697,820 (+)MAPPER
Rnor_6.0460,439,127 - 60,439,288NCBI
Rnor_5.0460,179,409 - 60,179,570UniSTS
RGSC_v3.4460,262,965 - 60,263,127RGD
RGSC_v3.4460,262,966 - 60,263,127UniSTS
RGSC_v3.1460,539,096 - 60,539,257RGD
Celera456,782,083 - 56,782,236UniSTS
RH 3.4 Map4383.6UniSTS
RH 3.4 Map4383.6RGD
RH 2.0 Map4430.3RGD

Flank 2 / 1 (Gimap5)
Rat AssemblyChrPosition (strand)Source
GRCr8479,025,151 - 79,031,917 (+)NCBI
mRatBN7.2477,693,417 - 77,701,025 (+)NCBI
mRatBN7.2 Ensembl477,687,564 - 77,703,086 (+)Ensembl
UTH_Rnor_SHR_Utx482,902,037 - 82,908,725 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.0478,677,516 - 78,684,204 (+)NCBI
UTH_Rnor_WKY_Bbb_1.0477,117,807 - 77,124,495 (+)NCBI
Rnor_6.0478,377,228 - 78,386,683 (+)NCBI
Rnor_6.0 Ensembl478,378,144 - 78,385,577 (+)Ensembl
Rnor_5.04143,066,311 - 143,073,003 (+)NCBI
RGSC_v3.4476,836,521 - 76,843,214 (+)NCBI
RGSC_v3.1477,112,650 - 77,119,327 (+)NCBI
Celera472,631,351 - 72,638,043 (+)NCBI
Cytogenetic Map4q24NCBI

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_phys_biochem males have significantly higher serum total cholesterol and significantly impaired glucose tolerance after 28 weeks as compared to the BB.SHR-(D4Got41-Tacr1) rats 1334440
strain_phys_biochem Strain shows significantly reduced expression of Eif2ak3,Zfp103,Vamp8, and Ttgn1. Ptgs2 was not expressed in blood. 1334440

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-28 BB.SHR-(D4Got41-Gimap5)/K    BB.SHR-(D4Got41-Gimap5)/K    Name updated 68913 APPROVED
2013-08-28 BB.SHR-(D4Got41-Gimap5)/K    BB.SHR-(D4Got41-Gimap5)/K    Name updated 68913 APPROVED