Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: SS.MNS-(Vamp2-D10M11Mit84)/Mco

Symbol: SS.MNS-(Vamp2-D10M11Mit84)/Mco
Strain: SS.MNS-(Vamp2-D10M11Mit84)
Substrain: Mco
RGD ID: 1357173
Citation ID: RRID:RGD_1357173
Ontology ID: RS:0000907
Also Known As: S.M(10c); SSJr.MNS-(Vamp2-D10M11Mit84)/Mco; SS.MNS-(Vamp2-D10M11Mit84)/Mco
Type: congenic
Available Source: Not Available
Origination: Medical College of Ohio, Toledo, Ohio, USA
Description: This congenic strain is derived by introgressing a desired region of chr 10 from MNS to the SS/Jr recipient.
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21053,793,581 - 53,797,815RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01055,675,171 - 55,679,405RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01055,418,231 - 55,422,465RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41055,848,264 - 55,852,132RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Is the nitric oxide system involved in genetic hypertension in Dahl rats? Deng AY Kidney Int 1998 Jun;53(6):1501-11.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 2 / 1 (D10M11Mit84)
Rat AssemblyChrPosition (strand)Source
Cytogenetic Map10 RGD

Flank 1 / 1 (Vamp2)
Rat AssemblyChrPosition (strand)Source
GRCr81054,292,423 - 54,296,657 (+)NCBI
mRatBN7.21053,793,581 - 53,797,815 (+)NCBI
mRatBN7.2 Ensembl1053,793,923 - 53,797,809 (+)Ensembl
UTH_Rnor_SHR_Utx1058,455,722 - 58,459,585 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01057,944,320 - 57,948,183 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01053,452,495 - 53,456,350 (+)NCBI
Rnor_6.01055,675,171 - 55,679,405 (+)NCBI
Rnor_6.0 Ensembl1055,675,575 - 55,679,450 (+)Ensembl
Rnor_5.01055,418,231 - 55,422,465 (+)NCBI
RGSC_v3.41055,848,264 - 55,852,132 (+)NCBI
RGSC_v3.11055,861,886 - 55,865,753 (+)NCBI
Celera1052,959,486 - 52,963,354 (+)NCBI
Cytogenetic Map10q24NCBI

Additional Information