Strain Report - Rat Genome Database

Name: BN.LEW-( D10Rat100-D10Rat126 )/Rj
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: BN.LEW-(D10Rat100-D10Rat126)/Rj

Symbol:

BN.LEW-(D10Rat100-D10Rat126)/Rj

Strain:

BN.LEW-(D10Rat100-D10Rat126)

Substrain:

RGD ID:

1331834

Citation ID:

RRID:RGD_1331834

Ontology ID:

RS:0000120

Also Known As:

BN.LEWc10B; BN.LEW-(D10Rat100-D10Rat126)/Rj; BN.LEW-(D10Rat100-D10Rat126)/Rj

Type:

congenic

Available Source:

Not Available

Origination:

Institut National de la Sante et de la Recherche Medicale, Toulouse, France

Description:

This congenic strain was derived from female LEW rats and male BN rats obtained from the Janvier breeding center, Le Genest-Saint-Isle, France. F1 offsprings were crossed with BN males to transfer the desired locus to BN background.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	25,790,546 - 41,482,228	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	10	26,517,020 - 42,716,241	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	10	26,363,403 - 42,526,523	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	10	26,434,477 - 26,434,620	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Studies of congenic lines in the Brown Norway rat model of Th2-mediated immunopathological disorders show that the aurothiopropanol sulfonate-induced immunological disorder (Aiid3) locus on chromosome 9 plays a major role compared to Aiid2 on chromosome 10.	Mas M, etal., J Immunol 2004 May 15;172(10):6354-61.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D10Rat100)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	25,790,546 - 25,790,689 (+)	MAPPER
Rnor_6.0	10	26,517,020 - 26,517,162	NCBI
Rnor_5.0	10	26,363,403 - 26,363,545	UniSTS
RGSC_v3.4	10	26,434,477 - 26,434,620	RGD
RGSC_v3.4	10	26,434,478 - 26,434,620	UniSTS
RGSC_v3.1	10	26,435,526 - 26,435,669	RGD
Celera	10	25,327,426 - 25,327,570	UniSTS
RH 2.0 Map	10	291.3	RGD
SHRSP x BN Map	10	27.23	RGD

Flank 2 / 1 (D10Rat126)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	41,482,022 - 41,482,228 (+)	MAPPER
Rnor_6.0	10	42,716,036 - 42,716,241	NCBI
Rnor_5.0	10	42,526,318 - 42,526,523	UniSTS
Celera	10	40,777,431 - 40,777,636	UniSTS
RH 3.4 Map	10	452.9	UniSTS
RH 3.4 Map	10	452.9	RGD
RH 2.0 Map	10	470.1	RGD
SHRSP x BN Map	10	38.6199	RGD
FHH x ACI Map	10	35.9499	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: BN.LEW-(D10Rat100-D10Rat126)/Rj