Strain Report - Rat Genome Database

Name: SS.BN-( D13Hmgc37-D13Got22 )/Mcwi
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: SS.BN-(D13Hmgc37-D13Got22)/Mcwi

Symbol:

SS.BN-(D13Hmgc37-D13Got22)/Mcwi

Strain:

SS.BN-(D13Hmgc37-D13Got22)

Substrain:

Mcwi

RGD ID:

12798529

Citation ID:

RRID:RGD_12798529

Ontology ID:

RS:0004387

Previously known as:

Line 5-1; SS.BN-(D13Hmgc37-D13Got22)/Mcwi

Type:

congenic

Source:

Medical College of Wisconsin, Milwaukee, Wisconsin

Origin:

SS/JrHsdMcwi were crossed with SS.BN-(D13Rat111-D13Got22)/Mcwi, rats from F₁ were intercrossed and genotyped to get the congenic strain

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	30,737,550 - 30,737,765	RGD_MAPPER_PIPELINE	mRatBN7.2
mRatBN7.2	5	93,541,170 - 93,542,503	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	13	35,643,050 - 49,720,682	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_6.0	5	96,601,805 - 96,603,137	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	13	40,757,538 - 54,791,605	RGD_MAPPER_PIPELINE	Rnor5.0
Rnor_5.0	5	100,631,702 - 100,633,034	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	13	32,396,527 - 45,828,716	RGD_MAPPER_PIPELINE	RGSC3.4
RGSC_v3.4	5	97,701,780 - 97,703,112	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased mean systemic arterial blood pressure (IAGP)

decreased urine protein level (IAGP)

Phenotype Values via PhenoMiner Click to see Annotation Detail View

Options:

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Clinical Measurement

mean arterial blood pressure

urine total protein excretion rate

References

References - curated

#	Reference Title	Reference Citation
1.	Narrowing a region on rat chromosome 13 that protects against hypertension in Dahl SS-13BN congenic strains.	Moreno C, etal., Am J Physiol Heart Circ Physiol. 2011 Apr;300(4):H1530-5. doi: 10.1152/ajpheart.01026.2010. Epub 2011 Jan 21.

Region

Position Markers

Flank 1 / 1 (D13Hmgc37)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	13	30,737,550 - 30,737,765 (+)	MAPPER
Rnor_6.0	13	35,643,050 - 35,643,266	NCBI
Rnor_5.0	13	40,757,538 - 40,757,754	UniSTS
RGSC_v3.4	13	32,396,527 - 32,396,743	UniSTS
Celera	13	30,632,228 - 30,632,444	UniSTS
Cytogenetic Map	13	q11	UniSTS

Flank 2 / 1 (D13Got22)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	93,541,170 - 93,542,503 (+)	MAPPER
Rnor_6.0	13	49,720,575 - 49,720,682	NCBI
Rnor_6.0	5	96,601,805 - 96,603,137	NCBI
Rnor_5.0	5	100,631,702 - 100,633,034	UniSTS
Rnor_5.0	13	54,791,498 - 54,791,605	UniSTS
RGSC_v3.4	5	97,701,780 - 97,703,112	UniSTS
RGSC_v3.4	13	45,828,608 - 45,828,716	RGD
RGSC_v3.4	13	45,828,609 - 45,828,716	UniSTS
RGSC_v3.1	13	45,842,652 - 45,842,759	RGD
Celera	13	44,707,006 - 44,707,111	UniSTS
Celera	5	92,175,218 - 92,176,550	UniSTS
RH 3.4 Map	13	114.1	RGD
RH 3.4 Map	13	114.1	UniSTS
RH 2.0 Map	13	398.3	RGD
Cytogenetic Map	13	q13	UniSTS

Additional Information

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-24	SS.BN-(D13Hmgc37-D13Got22)/Mcwi		SS.BN-(D13Hmgc37-D13Rat22)/Mcwi		Symbol updated	68687	APPROVED
2017-03-24	SS.BN-(D13Hmgc37-D13Got22)/Mcwi		SS.BN-(D13Hmgc37-D13Rat22)/Mcwi		Symbol updated	68687	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: SS.BN-(D13Hmgc37-D13Got22)/Mcwi

Mammalian Phenotype

Related Phenotype Data for Term "SS.BN-(D13Hmgc37-D13Got22)/Mcwi" (RS:0004387)