Strain Report - Rat Genome Database

Name: CDS.CDR-(D4Rat9-D4Rat153)/Ygl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Strain Registration

General

Strain: CDS.CDR-(D4Rat9-D4Rat153)/Ygl

Symbol:

CDS.CDR-(D4Rat9-D4Rat153)/Ygl

Strain:

CDS.CDR-(D4Rat9-D4Rat153)

Substrain:

Ygl

RGD ID:

11530008

Citation ID:

RRID:RGD_11530008

Ontology ID:

RS:0004207

Previously known as:

CDs/yRNO4Locus^CDr/y

Type:

congenic

Source:

Laboratory for Molecular Medicine and Israeli Rat Genome Center Barzilai University Med Ctr Campus 2 Hahistadrut St Ashkelon 78278, Israel

Origin:

This CDS congenic containing genomic elements from CDR was created by crossing the consomic strain CDS-Chr 4CDR/Ygl(RGD:4889499) with CDS. The congenic carries QTL affecting diabeties initation.

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	26,907,285 - 26,907,447	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	4	23,991,721 - 23,991,882	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	4	23,916,923 - 23,917,084	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	4	23,537,363 - 23,537,525	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Experimental Data Annotations Click to see Annotation Detail View

Rat Strain

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CDS.CDR-(D4Rat9- D4Rat153)/Ygl		IEA		7241799		RGD

Vertebrate Trait

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
blood glucose amount		EXP		11528530		RGD

Disease Annotations Click to see Annotation Detail View

type 2 diabetes mellitus (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Three interacting genomic loci incorporating two novel mutations underlie the evolution of diet-induced diabetes.	Yagil Y, etal., Mol Med. 2016 Jul 26;22. doi: 10.2119/molmed.2016.00114.

Region

Position Markers

Flank 1 / 1 (D4Rat9)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	26,907,285 - 26,907,447 (+)	MAPPER
Rnor_6.0	4	23,991,721 - 23,991,882	NCBI
Rnor_5.0	4	23,916,923 - 23,917,084	UniSTS
RGSC_v3.4	4	23,537,364 - 23,537,525	UniSTS
RGSC_v3.4	4	23,537,363 - 23,537,525	RGD
RGSC_v3.1	4	23,537,364 - 23,537,525	RGD
Celera	4	22,378,595 - 22,378,756	UniSTS
RH 3.4 Map	4	160.7	RGD
RH 3.4 Map	4	160.7	UniSTS
RH 2.0 Map	4	172.2	RGD
SHRSP x BN Map	4	10.2799	RGD
FHH x ACI Map	4	13.41	RGD
Cytogenetic Map	4	q12	UniSTS

Flank 2 / 1 (D4Rat153)

Rat Assembly	Chr	Position (strand)	Source
RGSC_v3.1	4	42,637,314 - 42,637,464	RGD
RH 2.0 Map	4	341.4	RGD
SHRSP x BN Map	4	27.2	RGD

Strain QTL Data

Symbol	Name	Trait
Niddm71	Non-insulin dependent diabetes mellitus QTL 71	blood glucose amount (VT:0000188)

Additional Information

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-03-14	CDS.CDR-(D4Rat9-D4Rat153)/Ygl		CDS.CDR-(D4Rat9- D4Rat153)/Ygl		Symbol updated	68687	APPROVED
2018-03-14	CDS.CDR-(D4Rat9-D4Rat153)/Ygl		CDS.CDR-(D4Rat9- D4Rat153)/Ygl		Symbol updated	68687	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: CDS.CDR-(D4Rat9-D4Rat153)/Ygl