Strain Report - Rat Genome Database

Send us a Message

Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

Strain: SS.SHR-(D9Mco113-D9Mco124)/Bj

Symbol: SS.SHR-(D9Mco113-D9Mco124)/Bj
Strain: SS.SHR-(D9Mco113-D9Mco124)
Substrain: Bj
RGD ID: 11354924
Citation ID: RRID:RGD_11354924
Ontology ID: RS:0004202
Previously known as: S.SHR(9)strain 3; S.SHR(9)X10AX6X5; SS.SHR-(D9Mco113-D9Mco124)/Bj
Type: congenic
Source: University of Toledo College of Medicine and Life Sciences
Origin: This is a congenic substrain developed by crossing SS.SHR-(D9Rat7-D9Rat84)/Mco to SS/Jr and the F1 were intercrossed to produce an F2 population,which was genotyped using microsatellite markers. The selected recombinant rats were crossed to SS/Jr again to duplicate the recombinant region.
Last Known Status: Unknown
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2991,113,977 - 91,114,199RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0995,430,880 - 97,679,852RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0995,118,069 - 97,361,568RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4987,225,627 - 89,709,209RGD_MAPPER_PIPELINERGSC3.4


References - curated
# Reference Title Reference Citation
1. High-resolution mapping of a novel rat blood pressure locus on chromosome 9 to a region containing the Spp2 gene and colocalization of a QTL for bone mass. Nie Y, etal., Physiol Genomics. 2016 Jun;48(6):409-19. doi: 10.1152/physiolgenomics.00004.2016. Epub 2016 Apr 25.


Position Markers

Flank 1 / 1 (D9Mco124)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2991,113,977 - 91,114,199 (+)MAPPER
Rnor_6.0997,679,633 - 97,679,852RGD
Rnor_5.0997,361,349 - 97,361,568RGD
RGSC_v3.4989,708,990 - 89,709,209RGD

Flank 1 / 1 (D9Mco113)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0995,430,880 - 95,430,880RGD
Rnor_5.0995,118,069 - 95,118,088RGD
RGSC_v3.4987,225,627 - 87,226,420RGD
Strain QTL Data
Symbol Name Trait
Bmd92 Bone mineral density QTL 92 tibia mineral mass   (VT:1000283)    

Additional Information