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Strain Registration

Strain: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1/Kyo

Symbol: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1/Kyo
Strain: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1
Substrain: Kyo
RGD ID: 10043382
Citation ID: RRID:RGD_10043382
Ontology ID: RS:0003906
Alleles: Lgi1
Also Known As: F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1Kyo; F344.NER-Ner1 Ner3 Lgi1m1Kyo; NBRP Rat No: 0673; F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1/Kyo; F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1^[m1]/Kyo
Type: congenic
Available Source: National BioResource Project for the Rat in Japan
Origination: Graduate School of Medicine, Kyoto University
Description: Triple congenic rat made by mating F344.NER-(D1Mgh6-D1Rat132)(D5Mgh4-D5Rat36)/Kyo and F344-Lgi1m1Kyo.
Coat Color: Albino
Inbred Generations: F9
Last Known Status: Cryopreserved Sperm (as of 2023-12-29)
Research Usage Neurobiology
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,790,149 - 218,748,178RGD_MAPPER_PIPELINEmRatBN7.2
mRatBN7.25138,113,556 - 138,113,774RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05143,846,157 - 143,846,372RGD_MAPPER_PIPELINERnor6.0
Rnor_6.0191,394,009 - 238,824,901RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05147,610,023 - 147,610,238RGD_MAPPER_PIPELINERnor5.0
Rnor_5.0192,524,380 - 246,113,473RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45145,186,817 - 145,187,034RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.4187,656,636 - 224,420,760RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Strains registered by the National Bio Resource Project for the Rat in Japan Personal Communication with NBRP
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D1Mgh6)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2187,790,149 - 87,790,276 (+)MAPPER
Rnor_6.0191,394,009 - 91,394,135NCBI
Rnor_5.0192,524,380 - 92,524,506UniSTS
RGSC_v3.4187,656,637 - 87,656,763UniSTS
RGSC_v3.4187,656,636 - 87,656,763RGD
RGSC_v3.1187,734,748 - 87,734,874RGD
Celera182,141,272 - 82,141,398UniSTS
RH 3.4 Map1862.9RGD
RH 3.4 Map1862.9UniSTS
RH 2.0 Map1559.1RGD
SHRSP x BN Map143.4499RGD

Flank 2 / 1 (D1Rat73)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21218,748,008 - 218,748,178 (+)MAPPER
Rnor_6.01238,824,734 - 238,824,901NCBI
Rnor_5.01246,113,306 - 246,113,473UniSTS
RGSC_v3.41224,420,592 - 224,420,760RGD
RGSC_v3.41224,420,593 - 224,420,760UniSTS
RGSC_v3.11224,584,615 - 224,584,783RGD
Celera1216,003,300 - 216,003,467UniSTS
RH 2.0 Map11189.4RGD
SHRSP x BN Map1116.5799RGD
FHH x ACI Map1106.86RGD

Flank 1 / 2 (D5Mgh4)
Rat AssemblyChrPosition (strand)Source
RH 3.4 Map5165.4UniSTS
RH 3.4 Map5165.4RGD
Cytogenetic Map5 RGD

Flank 2 / 2 (D5Rat36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25138,113,556 - 138,113,774 (+)MAPPER
Rnor_6.05143,846,157 - 143,846,372NCBI
Rnor_5.05147,610,023 - 147,610,238UniSTS
RGSC_v3.45145,186,818 - 145,187,033UniSTS
RGSC_v3.45145,186,817 - 145,187,034RGD
RGSC_v3.15145,196,810 - 145,197,027RGD
Celera5136,626,405 - 136,626,620UniSTS
RH 3.4 Map5909.5RGD
RH 3.4 Map5909.5UniSTS
RH 2.0 Map5884.1RGD
SHRSP x BN Map576.2899RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_reproduction Sib mating. 1302502

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-26 F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1/Kyo    F344.NER-(D1Mgh6-D1Rat73)(D5Mgh4-D5Rat36)Lgi1m1/Kyo    Name updated 68913 APPROVED