rs6683273 Rat Genome Database

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Variant: rs6683273 -  Homo sapiens

RGD ID: 406244551
RS ID: rs6683273
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: PRDM16  
Reference Nucleotide: A
Variant Nucleotide: ?
Position
Assembly Chr Position
GRCh38 1 3,342,619
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs6683273HumanQRS duration  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:27659466

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs6683273HumanQRS complex  IAGP 405850206 GWAS_CATALOGPMID:27659466
rs6683273HumanQRS duration  IAGP 405850206 GWAS_CATALOGPMID:27659466
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
QRS duration  (IAGP)

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS622969_H GCST003844 QRS duration 59,565 European ancestry individuals, 690 Orcadian (founder/genetic isolate) individuals ? NR 3E-8 7.523 rs6683273 N/A QRS complex (EFO:0005054)
QRS duration (EFO:0005055)
PMID:27659466

Variant Details
Variant Transcripts
Gene Symbol:PRDM16
Accession:NM_022114
Location:INTRON

Gene Symbol:PRDM16
Accession:NM_199454
Location:INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST003844 GWAS Catalog