rs116661163 Rat Genome Database

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Variant: rs116661163 -  Homo sapiens

RGD ID: 406306979
RS ID: rs116661163
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LRRN2  
Reference Nucleotide: C
Variant Nucleotide: C
Position
Assembly Chr Position
GRCh38 1 204,641,544
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs116661163Humanadrenal gland renin amount  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:28369058
rs116661163Humanblood renin amount  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:28369058
rs116661163Humankidney renin amount  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:28369058
rs116661163Humanrenin activity  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:28369058

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs116661163Humanrenin measurement  IAGP 405850206 GWAS_CATALOGPMID:28369058
Experimental Data Annotations     Click to see Annotation Detail View

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1137861_H GCST009731 Blood protein levels in cardiovascular risk 3,394 European ancestry individuals C 0.98 4E-17 16.398 rs116661163 0.72 renin measurement (EFO:0010616)
 PMID:28369058

Variant Details
Variant Transcripts
Gene Symbol:LRRN2
Accession:NM_201630
Location:5UTRS;INTRON

Gene Symbol:LRRN2
Accession:NM_006338
Location:5UTRS;INTRON

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST009731 GWAS Catalog