RGD Reference Report - Molecular and in silico analyses of the full-length isoform of usherin identify new pathogenic alleles in Usher type II patients. - Rat Genome Database

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Molecular and in silico analyses of the full-length isoform of usherin identify new pathogenic alleles in Usher type II patients.

Authors: Baux, D  Larrieu, L  Blanchet, C  Hamel, C  Ben Salah, S  Vielle, A  Gilbert-Dussardier, B  Holder, M  Calvas, P  Philip, N  Edery, P  Bonneau, D  Claustres, M  Malcolm, S  Roux, AF 
Citation: Baux D, etal., Hum Mutat. 2007 Aug;28(8):781-9.
RGD ID: 8547962
Pubmed: PMID:17405132   (View Abstract at PubMed)
DOI: DOI:10.1002/humu.20513   (Journal Full-text)

The usherin gene (USH2A) has been screened for mutations causing Usher syndrome type II (USH2). Two protein isoforms have been identified: a short isoform of 1,546 amino acids and a more recently recognized isoform extending to 5,202 amino acids. We have screened the full length by genomic sequencing. We confirm that many mutations occur in the exons contributing solely to the longer form. USH2 is an autosomal recessive disorder and, in contrast to previous studies, both mutations were identified in 23 patients and a single mutation in 2 out of 33 patients. A total of 34 distinct mutated alleles were identified, including one complex allele with three variants and another with two. A total of 27 of these are novel, confirming that most mutations in usherin are private. Many of the mutations will lead to prematurely truncated protein but as there are a substantial number of missense variants, we have used in silico analysis to assess their pathogenicity. Evidence that they are disease-causing has been produced by protein alignments and three-dimensional (3D) structural predictions when possible. We have identified a previously unrecognized cysteine rich structural domain, containing 12 dicysteine repeats, and show that three missense mutations result in the loss of one of a pair of the defining cysteine-cysteine pairs.

RGD Manual Disease Annotations    Click to see Annotation Detail View
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Usher syndrome type 2 susceptibilityIAGP 8547962DNA:mutations:multiple (human)RGD 
Usher syndrome type 2 susceptibilityISOUSH2A (Homo sapiens)8547962; 8547962DNA:mutations:multiple (human)RGD 

Phenotype Annotations    Click to see Annotation Detail View

Manual Human Phenotype Annotations - RGD

TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
Rod-cone dystrophy susceptibilityIAGP 8547962DNA:mutations:multipleRGD 
Sensorineural hearing impairment susceptibilityIAGP 8547962DNA:mutations:multipleRGD 
Objects Annotated

Genes (Rattus norvegicus)
Ush2a  (usherin)

Genes (Mus musculus)
Ush2a  (usherin)

Genes (Homo sapiens)
USH2A  (usherin)


Additional Information